Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 0.0e+00 1726.1 924 100.0
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 0.0e+00 1235.3 928 75.1
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 0.0e+00 1231.9 930 75.4
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 0.0e+00 1199.9 963 70.4
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 0.0e+00 1198.3 964 70.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 0.0e+00 1194.5 925 72.9
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 0.0e+00 1165.2 920 71.8
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 0.0e+00 1140.9 942 70.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 0.0e+00 1138.3 1000 65.9
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 0.0e+00 1135.6 942 69.6
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 0.0e+00 1124.4 948 69.3
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 6.3e-312 1074.3 947 67.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.2e-305 1053.1 936 66.0
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.3e-272 942.6 934 60.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 5.0e-267 924.9 927 60.1
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 5.2e-264 914.8 950 59.6
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-263 912.1 888 58.7
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 4.1e-261 905.2 833 61.5
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 6.8e-256 887.9 821 61.6
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.7e-254 883.2 828 62.2
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.7e-252 875.9 944 56.7
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.9e-245 853.2 953 55.4
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 3.2e-245 852.4 959 54.4
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 1.0e-243 847.4 964 54.7
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.8e-240 836.6 959 54.0
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 2.2e-238 829.7 973 53.5
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 2.2e-238 829.7 960 53.9
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 4.9e-238 828.6 959 53.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.9e-237 826.6 956 54.3
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.3e-235 819.7 942 54.6
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.9e-235 818.9 948 54.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.5e-234 816.2 963 53.4
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 4.0e-232 808.9 963 52.5
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 6.8e-232 808.1 960 52.7
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 6.8e-232 808.1 971 52.6
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 8.9e-232 807.7 950 53.8
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 6.4e-230 801.6 811 57.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.1e-229 800.8 950 52.5
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.2e-229 799.3 970 53.6
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 9.2e-229 797.7 987 52.7
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.6e-228 797.0 963 53.4
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 6.6e-227 791.6 960 52.9
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.3e-226 788.1 972 51.1
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 2.4e-224 783.1 964 51.3
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.0e-224 782.3 964 51.3
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.4e-223 779.2 925 53.5
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.6e-223 778.1 966 50.8
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 3.8e-222 775.8 947 52.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.4e-221 771.9 969 50.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.0e-219 767.7 1030 49.8
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.1e-219 765.4 951 50.9
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 9.6e-218 761.1 944 50.6
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.4e-216 756.5 970 51.2
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 5.3e-216 755.4 1045 47.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 5.8e-215 751.9 849 55.1
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 9.3e-213 744.6 959 49.5
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.6e-212 743.8 1003 49.3
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 3.5e-212 742.7 785 56.4
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.0e-211 739.6 1024 47.9
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 5.1e-211 738.8 956 50.2
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 8.7e-211 738.0 953 50.8
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 1.1e-210 737.6 864 52.2
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 4.8e-209 732.3 896 51.9
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 6.2e-209 731.9 1015 49.1
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.2e-209 731.9 963 49.6
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 2.4e-208 729.9 1016 48.4
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.1e-205 721.1 965 49.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.9e-205 720.3 1138 44.3
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 4.2e-205 719.2 976 49.3
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.6e-204 717.2 967 48.9
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 6.7e-203 711.8 965 48.3
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.5e-202 709.9 830 52.4
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 3.3e-202 709.5 850 50.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.4e-202 708.4 965 48.0
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 4.8e-201 705.7 953 49.4
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.0e-199 700.3 967 49.1
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 4.5e-199 699.1 971 48.3
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.2e-196 691.0 841 50.4
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.2e-196 691.0 957 47.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 6.0e-196 688.7 926 47.7
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 8.7e-195 684.9 952 46.5
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 5.3e-192 675.6 939 47.1
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 6.9e-192 675.2 863 50.1
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.5e-191 674.1 943 47.6
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.5e-191 674.1 935 47.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 2.6e-191 673.3 939 47.1
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.2e-189 666.4 944 46.8
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 4.6e-188 662.5 937 46.5
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 4.6e-188 662.5 937 46.5
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 4.6e-188 662.5 942 46.7
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 1.3e-187 661.0 971 45.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.3e-187 661.0 962 46.4
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.3e-187 661.0 1017 45.0
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.9e-187 659.4 875 49.1
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.9e-186 657.1 950 46.7
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.3e-186 656.0 929 46.8
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 5.7e-186 655.6 855 47.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 7.4e-186 655.2 938 46.1
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.3e-185 654.4 974 46.3
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.3e-185 654.4 1005 45.8
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.8e-185 653.3 939 46.9
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.3e-185 652.1 935 47.1
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 9.0e-184 648.3 860 49.4
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 9.0e-184 648.3 928 47.6
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 3.4e-183 646.4 1005 44.7
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 3.4e-183 646.4 1016 44.8
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.9e-182 643.3 940 45.6
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 3.8e-182 642.9 1003 44.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 3.2e-181 639.8 869 46.7
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.2e-180 637.9 929 45.9
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.3e-178 629.8 898 46.2
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.2e-177 627.1 972 44.0
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 8.2e-177 625.2 887 47.4
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 6.5e-174 615.5 841 48.0
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 5.5e-173 612.5 930 46.0
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 7.2e-173 612.1 848 47.3
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 9.4e-173 611.7 960 44.5
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.6e-172 609.8 873 45.9
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.6e-172 609.8 873 45.9
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 7.4e-170 602.1 976 43.4
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.4e-168 597.8 926 44.8
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 4.8e-161 572.8 835 44.6
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.5e-157 561.2 960 42.3
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.2e-151 541.6 965 42.4
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.6e-151 541.2 974 42.6
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.2e-148 531.6 930 40.9
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.3e-145 521.5 991 40.3
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.1e-131 473.8 811 41.2
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 8.9e-131 472.2 849 40.8
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 3.3e-117 427.2 889 37.3
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-111 408.3 854 36.8
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-111 408.3 854 36.8
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 7.3e-109 399.4 352 65.1
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 5.2e-107 393.3 850 36.1
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 3.9e-102 377.1 697 39.3
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.2e-98 365.5 576 45.3
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 3.4e-98 364.0 377 55.7
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 8.4e-89 332.8 330 57.9
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.3e-84 318.9 285 57.9
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 4.5e-74 283.9 972 28.0
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 6.1e-71 273.5 258 59.3
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 8.5e-65 253.1 462 39.2
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.2e-64 251.1 423 43.0
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.0e-61 241.9 249 57.4
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-57 229.2 434 41.7
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 2.4e-43 181.8 138 71.0
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 5.2e-38 164.1 144 62.5
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 6.3e-36 157.1 218 42.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 8.3e-36 156.8 111 72.1
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.0e-35 153.7 92 83.7
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 2.7e-34 151.8 527 31.1
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 3.5e-34 151.4 188 51.6
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.7e-33 149.1 204 48.0
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 3.6e-31 141.4 156 48.7
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-28 131.7 87 75.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.9e-28 131.0 159 51.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 5.6e-24 117.5 79 75.9
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 7.3e-24 117.1 94 66.0
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 6.1e-23 114.0 93 68.8
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 2.3e-22 112.1 115 51.3
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 4.0e-22 111.3 85 71.8
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 9.8e-21 106.7 89 59.6
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.1e-19 103.2 57 91.2
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.4e-19 102.8 118 48.3
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-19 102.1 71 71.8
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 2.4e-19 102.1 65 81.5
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 4.1e-19 101.3 89 57.3
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.2e-18 99.8 92 59.8
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-18 98.2 104 51.9
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.3e-14 85.5 64 75.0
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 8.3e-12 77.0 126 39.7
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 1.9e-11 75.9 96 47.9
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.1e-11 74.7 92 46.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.6e-10 72.8 67 53.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.0e-10 72.4 90 54.4
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 3.5e-10 71.6 118 39.8
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.3e-09 69.7 60 55.0
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 3.0e-09 68.6 66 51.5
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.3e-08 65.1 47 72.3
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 9.5e-08 63.5 61 55.7
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 6.2e-07 60.8 76 50.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.1e-06 60.1 50 52.0


User provided reference genes

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