Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 0.0e+00 1075.1 550 100.0
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 7.8e-268 926.8 554 85.6
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.9e-262 908.3 551 84.8
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 4.3e-250 867.8 550 80.5
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 3.4e-247 858.2 549 79.2
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 4.5e-247 857.8 549 79.1
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 7.6e-247 857.1 538 80.5
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.0e-246 856.7 538 80.5
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.3e-246 856.3 537 80.8
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 7.1e-245 850.5 537 80.3
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.6e-244 847.8 538 79.6
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 2.1e-241 839.0 534 79.8
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 4.1e-240 834.7 533 78.8
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 6.9e-240 833.9 529 80.2
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.3e-225 786.6 464 84.5
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 5.2e-219 764.6 537 71.5
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.8e-217 758.1 521 70.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 6.3e-217 757.7 521 71.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 8.2e-217 757.3 533 71.9
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.4e-216 756.5 521 70.2
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.8e-214 748.4 513 70.6
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.1e-212 742.7 537 70.0
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.0e-211 740.3 537 68.9
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.3e-211 739.2 521 70.4
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 4.0e-211 738.4 549 68.9
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 6.7e-211 737.6 521 70.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 8.8e-211 737.3 549 66.5
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.0e-210 736.1 534 69.7
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 2.6e-210 735.7 518 71.6
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.3e-209 733.4 534 69.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.7e-209 733.0 521 69.9
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.7e-209 731.9 532 70.1
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 4.8e-209 731.5 527 69.6
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 5.3e-208 728.0 533 68.7
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 9.1e-208 727.2 523 69.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.6e-207 726.5 547 67.1
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 2.7e-207 725.7 531 69.9
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.5e-207 725.3 524 70.2
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.9e-207 724.5 520 70.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 7.7e-207 724.2 540 67.6
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.2e-206 722.6 526 69.2
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.9e-206 722.2 523 70.6
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-205 719.9 536 70.1
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 1.9e-205 719.5 537 67.6
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 4.2e-205 718.4 543 66.5
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.2e-204 716.8 543 66.5
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.7e-204 714.9 528 68.2
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 4.0e-203 711.8 513 69.2
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 5.2e-203 711.4 542 65.7
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 1.2e-202 710.3 541 65.6
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.5e-202 709.9 533 67.9
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 2.0e-202 709.5 515 69.1
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.6e-202 709.1 520 68.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 3.4e-202 708.8 511 71.2
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.7e-202 708.0 524 67.2
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.4e-200 702.6 512 68.8
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.1e-200 701.8 495 70.9
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 1.6e-199 699.9 508 68.9
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.6e-199 699.9 394 90.4
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.5e-199 698.7 530 67.5
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 4.5e-199 698.4 536 67.0
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 4.5e-199 698.4 536 67.0
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 4.5e-199 698.4 536 67.0
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.7e-198 696.4 525 66.3
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.3e-198 696.0 399 87.7
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 5.0e-198 694.9 520 67.7
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.9e-197 693.0 536 66.8
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.5e-197 692.6 536 64.9
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 7.2e-197 691.0 534 65.4
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.1e-196 689.5 534 65.0
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 6.1e-196 688.0 536 64.4
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 8.0e-196 687.6 538 65.4
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.0e-195 687.2 534 66.3
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.4e-195 686.8 544 65.8
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.4e-195 686.8 507 68.4
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.2e-194 683.7 528 66.1
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.5e-194 683.3 545 65.3
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 2.0e-194 682.9 520 66.0
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.6e-194 682.6 542 65.3
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.4e-194 682.2 529 65.8
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.4e-194 682.2 529 65.8
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 3.4e-194 682.2 527 65.7
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.4e-194 682.2 461 72.2
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 4.4e-194 681.8 544 65.1
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.7e-194 681.4 484 69.4
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 7.5e-194 681.0 528 65.7
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 9.8e-194 680.6 528 65.7
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 9.8e-194 680.6 544 65.1
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 9.8e-194 680.6 528 65.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 9.8e-194 680.6 527 65.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.7e-193 679.9 542 64.9
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 2.2e-193 679.5 543 65.2
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.2e-193 679.5 533 64.5
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 3.7e-193 678.7 521 67.4
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 6.3e-193 677.9 522 66.1
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.1e-192 677.2 524 65.1
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 1.1e-192 677.2 519 64.2
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-192 676.8 544 64.5
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.4e-192 676.8 484 69.2
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.8e-192 676.4 516 66.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.4e-192 674.9 462 73.8
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 7.0e-192 674.5 516 65.1
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 9.2e-192 674.1 542 64.6
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 7.8e-191 671.0 537 65.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.3e-190 670.2 509 65.6
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 6.6e-190 667.9 471 69.4
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 4.3e-189 665.2 476 69.1
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 2.8e-188 662.5 525 67.0
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.0e-187 660.6 568 61.6
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 3.4e-186 655.6 535 63.6
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 1.1e-184 650.6 517 64.6
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 7.3e-181 637.9 434 72.4
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 7.3e-173 611.3 540 57.6
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 9.5e-173 610.9 457 65.9
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 7.8e-167 591.3 451 65.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.9e-165 586.6 425 68.5
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 2.6e-162 576.2 521 55.7
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 6.4e-161 571.6 541 54.9
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.1e-160 570.9 500 57.2
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 2.4e-155 553.1 388 70.4
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.4e-153 545.0 389 69.7
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.0e-151 538.5 386 68.1
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 9.0e-131 471.5 362 64.9
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.2e-128 462.6 474 48.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.4e-123 446.8 456 49.1
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 4.1e-123 446.0 319 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 5.3e-123 445.7 524 44.5
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.4e-122 443.0 352 63.4
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.2e-116 421.8 334 62.3
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 4.7e-111 406.0 544 40.1
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.7e-108 396.4 552 38.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.2e-90 338.2 224 75.0
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.5e-88 330.5 245 69.0
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 1.2e-82 311.6 197 82.7
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 4.6e-66 256.5 171 74.3
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 5.0e-65 253.1 193 67.4
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.1e-62 243.8 196 65.3
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-56 224.6 159 71.1
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 6.8e-54 216.1 155 68.4
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 3.4e-53 213.8 150 77.3
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.8e-46 191.4 154 66.2
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.9e-43 181.4 149 65.8
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-40 172.2 149 62.4
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 7.9e-26 122.9 150 46.0
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.1e-25 120.2 92 62.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.3e-24 117.5 110 55.5
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 5.6e-24 116.7 71 83.1
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 5.3e-22 110.2 503 24.1
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 3.8e-20 104.0 75 72.0
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 3.2e-19 100.9 471 24.4
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 5.0e-12 77.0 67 53.7
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 5.0e-12 77.0 67 53.7
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.8e-09 68.6 46 73.9
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.2e-07 61.6 69 46.4
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 3.1e-06 57.8 52 51.9


User provided reference genes

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