Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0027466 Lotus japonicus HOM05D002788 ORTHO05D003199 2.4e-68 263.1 274 100.0
Lj4g0006274 Lotus japonicus HOM05D002788 ORTHO05D003199 1.9e-33 147.1 123 69.1
Glyma.05G099000 Glycine max HOM05D002788 ORTHO05D003199 3.9e-26 122.9 123 58.5
Phvul.003G239950 Phaseolus vulgaris HOM05D002788 ORTHO05D003199 3.3e-25 119.8 123 58.5
Ca_28705_v3 Cicer arietinum L. HOM05D002788 ORTHO05D003199 1.3e-24 117.9 123 58.5
Glyma.17G166700 Glycine max HOM05D002788 ORTHO05D003199 3.7e-24 116.3 123 56.1
Lalb_Chr05g0226181 Lupinus albus HOM05D002788 ORTHO05D003199 3.1e-23 113.2 122 54.9
Psat4g082600 Pisum sativum HOM05D002788 ORTHO05D003199 6.9e-23 112.1 115 60.9
RcHm_v2.0_Chr2g0106701 Rosa chinensis HOM05D002788 ORTHO05D003199 2.6e-22 110.2 123 52.0
TPR.G23902 Trifolium pratense HOM05D002788 ORTHO05D003199 2.6e-22 110.2 123 54.5
PGR004G1569 Punica granatum HOM05D002788 ORTHO05D003199 4.5e-22 109.4 105 57.1
CSS0038061 Camellia sinensis var. sinensis HOM05D002788 ORTHO05D003199 7.6e-22 108.6 108 55.6
MD02G1179200 Malus domestica HOM05D002788 ORTHO05D003199 1.0e-21 108.2 123 51.2
MD15G1289100 Malus domestica HOM05D002788 ORTHO05D003199 2.9e-21 106.7 123 51.2
GSVIVG01000215001 Vitis vinifera HOM05D002788 ORTHO05D003199 2.9e-21 106.7 118 55.1
HanXRQChr16g0529941 Helianthus annuus HOM05D002788 ORTHO05D003199 5.0e-21 105.9 114 56.1
Prupe.6G228700 Prunus persica HOM05D002788 ORTHO05D003199 5.0e-21 105.9 122 50.8
TWI53G1439 Tripterygium wilfordii HOM05D002788 ORTHO05D003199 5.0e-21 105.9 123 52.0
Thecc.01G063800 Theobroma cacao HOM05D002788 ORTHO05D003199 6.5e-21 105.5 123 52.0
Medtr4g094988 Medicago truncatula HOM05D002788 ORTHO05D003199 1.4e-20 104.4 123 52.8
Ah.02g125730 Amaranthus hybridus HOM05D002788 ORTHO05D003199 1.9e-20 104.0 113 55.8
arahy.Tifrunner.gnm1.ann1.3R5SIR Arachis hypogaea HOM05D002788 ORTHO05D003199 1.9e-20 104.0 122 53.3
FvH4_1g16800 Fragaria vesca HOM05D002788 ORTHO05D003199 1.9e-20 104.0 118 52.5
Hund13915 Selenicereus undatus HOM05D002788 ORTHO05D003199 2.5e-20 103.6 124 50.0
Lalb_Chr09g0333921 Lupinus albus HOM05D002788 ORTHO05D003199 7.2e-20 102.1 106 54.7
Duzib147G0609 Durio zibethinus HOM05D002788 ORTHO05D003199 1.6e-19 100.9 123 50.4
Ciclev10026104m.g Citrus clementina HOM05D002788 ORTHO05D003199 2.7e-19 100.1 123 49.6
EL10Ac6g15687 Beta vulgaris HOM05D002788 ORTHO05D003199 4.6e-19 99.4 113 53.1
Cpa.g.sc6.94 Carica papaya HOM05D002788 ORTHO05D003199 4.6e-19 99.4 123 48.8
Migut.L00184 Erythranthe guttata HOM05D002788 ORTHO05D003199 6.1e-19 99.0 114 53.5
TAR625G0979 Trochodendron aralioides HOM05D002788 ORTHO05D003199 6.1e-19 99.0 118 52.5
Potri.007G049300 Populus trichocarpa HOM05D002788 ORTHO05D003199 7.9e-19 98.6 120 50.0
Solyc02g092910.3 Solanum lycopersicum HOM05D002788 ORTHO05D003199 1.0e-18 98.2 114 53.5
Sopen02g037470 Solanum pennellii HOM05D002788 ORTHO05D003199 1.0e-18 98.2 114 53.5
PGR083G2469 Punica granatum HOM05D002788 ORTHO05D003199 1.8e-18 97.4 102 53.9
Actinidia36459 Actinidia chinensis HOM05D002788 ORTHO05D003199 2.3e-18 97.1 119 52.9
AUR62038257 Chenopodium quinoa HOM05D002788 ORTHO05D003199 2.3e-18 97.1 113 52.2
THA.LOC104804199 Tarenaya hassleriana HOM05D002788 ORTHO05D003199 2.3e-18 97.1 114 50.9
CSS0024021 Camellia sinensis var. sinensis HOM05D002788 ORTHO05D003199 3.0e-18 96.7 118 51.7
CDE06G0383 Ceratophyllum demersum HOM05D002788 ORTHO05D003199 3.9e-18 96.3 113 53.1
Manes.05G178100 Manihot esculenta HOM05D002788 ORTHO05D003199 5.1e-18 95.9 102 52.9
CDE04G1693 Ceratophyllum demersum HOM05D002788 ORTHO05D003199 1.1e-17 94.7 114 51.8
Peaxi162Scf00266g00098 Petunia axillaris HOM05D002788 ORTHO05D003199 1.1e-17 94.7 99 52.5
CANSAT25G1175 Cannabis sativa HOM05D002788 ORTHO05D003199 1.9e-17 94.0 123 48.8
MELO3C007587.2 Cucumis melo HOM05D002788 ORTHO05D003199 2.5e-17 93.6 120 50.8
Manes.13G117900 Manihot esculenta HOM05D002788 ORTHO05D003199 2.5e-17 93.6 123 46.3
Lj4C156T11 Lonicera japonica HOM05D002788 ORTHO05D003199 3.3e-17 93.2 131 48.1
AL7G13564 Arabidopsis lyrata HOM05D002788 ORTHO05D003199 4.3e-17 92.8 114 50.0
Lsat_1_v5_gn_2_85480 Lactuca sativa HOM05D002788 ORTHO05D003199 4.3e-17 92.8 89 58.4
Hma1.2p1_0239F.1_g100000 Hydrangea macrophylla HOM05D002788 ORTHO05D003199 5.7e-17 92.4 94 54.3
Sp7g34940 Schrenkiella parvula HOM05D002788 ORTHO05D003199 5.7e-17 92.4 114 50.0
Cfa018044 Carpinus fangiana HOM05D002788 ORTHO05D003199 7.4e-17 92.0 110 53.6
BcaNung02534 Brassica carinata HOM05D002788 ORTHO05D003199 9.7e-17 91.7 113 48.7
Solyc04g078400.3 Solanum lycopersicum HOM05D002788 ORTHO05D003199 9.7e-17 91.7 101 53.5
AT4G37280 Arabidopsis thaliana HOM05D002788 ORTHO05D003199 1.3e-16 91.3 114 49.1
Sopen04g032010 Solanum pennellii HOM05D002788 ORTHO05D003199 1.3e-16 91.3 101 53.5
Medtr3g102460 Medicago truncatula HOM05D002788 ORTHO05D003199 1.7e-16 90.9 102 52.9
DCAR_010851 Daucus carota HOM05D002788 ORTHO05D003199 2.2e-16 90.5 102 53.9
Nitab4.5_0001373g0010 Nicotiana tabacum HOM05D002788 ORTHO05D003199 2.2e-16 90.5 135 46.7
Carub.0007s0301 Capsella rubella HOM05D002788 ORTHO05D003199 4.8e-16 89.4 114 47.4
CARHR245670 Cardamine hirsuta HOM05D002788 ORTHO05D003199 4.8e-16 89.4 114 49.1
CsaV3_6G043580 Cucumis sativus L. HOM05D002788 ORTHO05D003199 4.8e-16 89.4 123 49.6
ECA238G0306 Erigeron canadensis HOM05D002788 ORTHO05D003199 6.3e-16 89.0 120 48.3
Eucgr.F00003 Eucalyptus grandis HOM05D002788 ORTHO05D003199 8.2e-16 88.6 102 51.0
Thhalv10025747m.g Eutrema salsugineum HOM05D002788 ORTHO05D003199 1.1e-15 88.2 115 49.6
Prupe.1G429500 Prunus persica HOM05D002788 ORTHO05D003199 1.1e-15 88.2 102 52.9
PGSC0003DMG400024952 Solanum tuberosum HOM05D002788 ORTHO05D003199 1.1e-15 88.2 129 47.3
ATR0736G213 Amborella trichopoda HOM05D002788 ORTHO05D003199 1.4e-15 87.8 114 49.1
CiPaw.15G050600 Carya illinoinensis HOM05D002788 ORTHO05D003199 1.4e-15 87.8 101 54.5
TPR.G25596 Trifolium pratense HOM05D002788 ORTHO05D003199 1.8e-15 87.4 108 50.0
GSVIVG01009409001 Vitis vinifera HOM05D002788 ORTHO05D003199 1.8e-15 87.4 101 51.5
Lj1g0026557 Lotus japonicus HOM05D002788 ORTHO05D003199 3.1e-15 86.7 102 48.0
Os11g0545600 Oryza sativa ssp. japonica HOM05D002788 ORTHO05D003199 3.1e-15 86.7 113 46.9
Ca_15927_v3 Cicer arietinum L. HOM05D002788 ORTHO05D003199 4.1e-15 86.3 102 52.0
RcHm_v2.0_Chr6g0308521 Rosa chinensis HOM05D002788 ORTHO05D003199 4.1e-15 86.3 102 50.0
A01p01690 Brassica napus HOM05D002788 ORTHO05D003199 5.3e-15 85.9 114 46.5
BraA01t00160Z Brassica rapa HOM05D002788 ORTHO05D003199 5.3e-15 85.9 114 46.5
THA.LOC104812581 Tarenaya hassleriana HOM05D002788 ORTHO05D003199 5.3e-15 85.9 108 45.4
Dinv26870 Davidia involucrata HOM05D002788 ORTHO05D003199 6.9e-15 85.5 100 53.0
HanXRQChr14g0449701 Helianthus annuus HOM05D002788 ORTHO05D003199 9.1e-15 85.1 118 49.2
Nitab4.5_0002578g0030 Nicotiana tabacum HOM05D002788 ORTHO05D003199 9.1e-15 85.1 118 48.3
Phvul.009G068400 Phaseolus vulgaris HOM05D002788 ORTHO05D003199 9.1e-15 85.1 103 50.5
C01p01850 Brassica napus HOM05D002788 ORTHO05D003199 1.5e-14 84.3 113 46.0
Lj4A764T9 Lonicera japonica HOM05D002788 ORTHO05D003199 1.5e-14 84.3 118 47.5
Sed0011866 Sechium edule HOM05D002788 ORTHO05D003199 1.5e-14 84.3 102 52.9
Glyma.04G042700 Glycine max HOM05D002788 ORTHO05D003199 2.6e-14 83.6 103 49.5
BolC1t00178H Brassica oleracea HOM05D002788 ORTHO05D003199 3.4e-14 83.2 117 44.4
ClCG05G020270 Citrullus lanatus HOM05D002788 ORTHO05D003199 3.4e-14 83.2 108 50.0
Zm00001eb236910 Zea mays HOM05D002788 ORTHO05D003199 3.4e-14 83.2 116 47.4
Actinidia33352 Actinidia chinensis HOM05D002788 ORTHO05D003199 4.5e-14 82.8 105 49.5
Sabra14G0014800 Salix brachista HOM05D002788 ORTHO05D003199 4.5e-14 82.8 112 45.5
unitig_748.g7265 Utricularia gibba HOM05D002788 ORTHO05D003199 4.5e-14 82.8 128 42.2
MSTRG.22251 Avicennia marina HOM05D002788 ORTHO05D003199 7.7e-14 82.0 101 47.5
CsaV3_4G034740 Cucumis sativus L. HOM05D002788 ORTHO05D003199 7.7e-14 82.0 108 50.0
Ciclev10001792m.g Citrus clementina HOM05D002788 ORTHO05D003199 1.3e-13 81.3 102 47.1
Migut.N02722 Erythranthe guttata HOM05D002788 ORTHO05D003199 1.3e-13 81.3 105 46.7
Glyma.06G043300 Glycine max HOM05D002788 ORTHO05D003199 1.7e-13 80.9 103 48.5
AL1G12120 Arabidopsis lyrata HOM05D002788 ORTHO05D003199 2.2e-13 80.5 102 45.1
Thecc.08G095900 Theobroma cacao HOM05D002788 ORTHO05D003199 2.2e-13 80.5 114 45.6
Duzib187G1145 Durio zibethinus HOM05D002788 ORTHO05D003199 2.9e-13 80.1 124 43.5
Gohir.A11G047700 Gossypium hirsutum HOM05D002788 ORTHO05D003199 2.9e-13 80.1 124 43.5
Gohir.D11G051300 Gossypium hirsutum HOM05D002788 ORTHO05D003199 2.9e-13 80.1 124 43.5
Dinv39260 Davidia involucrata HOM05D002788 ORTHO05D003199 3.8e-13 79.7 83 54.2
Gorai.007G055700 Gossypium raimondii HOM05D002788 ORTHO05D003199 3.8e-13 79.7 121 44.6
Sc15g0005830 Simmondsia chinensis HOM05D002788 ORTHO05D003199 3.8e-13 79.7 102 48.0
MD15G1076200 Malus domestica HOM05D002788 ORTHO05D003199 5.0e-13 79.3 103 47.6
Sed0000616 Sechium edule HOM05D002788 ORTHO05D003199 8.5e-13 78.6 126 45.2
AT1G02740 Arabidopsis thaliana HOM05D002788 ORTHO05D003199 1.1e-12 78.2 102 43.1
Atru.chr13.768 Acer truncatum HOM05D002788 ORTHO05D003199 1.4e-12 77.8 102 50.0
FvH4_2g33880 Fragaria vesca HOM05D002788 ORTHO05D003199 1.4e-12 77.8 108 43.5
QL06p040039 Quercus lobata HOM05D002788 ORTHO05D003199 1.4e-12 77.8 157 40.8
Oeu037164.1 Olea europaea HOM05D002788 ORTHO05D003199 2.5e-12 77.0 100 47.0
FAN15G1867 Fragaria x ananassa HOM05D002788 ORTHO05D003199 3.2e-12 76.6 108 44.4
FAN28G2079 Fragaria x ananassa HOM05D002788 ORTHO05D003199 3.2e-12 76.6 119 42.9
SMO119G0471 Selaginella moellendorffii HOM05D002788 ORTHO05D003199 3.2e-12 76.6 103 45.6
ClCG01G017100 Citrullus lanatus HOM05D002788 ORTHO05D003199 4.2e-12 76.3 157 38.9
FAN19G2167 Fragaria x ananassa HOM05D002788 ORTHO05D003199 4.2e-12 76.3 107 45.8
Lsat_1_v5_gn_4_164040 Lactuca sativa HOM05D002788 ORTHO05D003199 4.2e-12 76.3 125 44.8
MD08G1091800 Malus domestica HOM05D002788 ORTHO05D003199 4.2e-12 76.3 102 49.0
PSO170G3656 Papaver somniferum HOM05D002788 ORTHO05D003199 9.4e-12 75.1 120 45.8
PSO210G1707 Papaver somniferum HOM05D002788 ORTHO05D003199 9.4e-12 75.1 120 45.8
QL02p003467 Quercus lobata HOM05D002788 ORTHO05D003199 9.4e-12 75.1 102 47.1
vmacro05249 Vaccinium macrocarpon HOM05D002788 ORTHO05D003199 9.4e-12 75.1 100 50.0
RcHm_v2.0_Chr2g0106721 Rosa chinensis HOM05D002788 ORTHO05D003199 1.2e-11 74.7 116 44.8
CANSAT25G3002 Cannabis sativa HOM05D002788 ORTHO05D003199 2.1e-11 73.9 102 47.1
Pp3c11_2210 Physcomitrium patens HOM05D002788 ORTHO05D003199 2.1e-11 73.9 117 43.6
ECA232G1505 Erigeron canadensis HOM05D002788 ORTHO05D003199 2.7e-11 73.6 189 33.3
Mapoly0072s0079 Marchantia polymorpha HOM05D002788 ORTHO05D003199 2.7e-11 73.6 115 42.6
Aqoxy5G01141 Aquilegia oxysepala HOM05D002788 ORTHO05D003199 3.6e-11 73.2 118 48.3
FAN27G2631 Fragaria x ananassa HOM05D002788 ORTHO05D003199 3.6e-11 73.2 118 40.7
Pp3c7_24000 Physcomitrium patens HOM05D002788 ORTHO05D003199 3.6e-11 73.2 121 42.1
Duzib093G2105 Durio zibethinus HOM05D002788 ORTHO05D003199 4.7e-11 72.8 116 42.2
FAN20G2575 Fragaria x ananassa HOM05D002788 ORTHO05D003199 4.7e-11 72.8 108 43.5
Carub.0001s0184 Capsella rubella HOM05D002788 ORTHO05D003199 6.1e-11 72.4 102 45.1
FAN24G0184 Fragaria x ananassa HOM05D000038 ORTHO05D000612 6.1e-11 72.4 108 43.5
Lalb_Chr25g0279131 Lupinus albus HOM05D002788 ORTHO05D003199 6.1e-11 72.4 79 53.2
Cpa.g.sc21.141 Carica papaya HOM05D002788 ORTHO05D003199 7.9e-11 72.0 120 39.2
FAN19G1412 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.0e-10 71.6 115 44.3
FAN23G0486 Fragaria x ananassa HOM05D002788 ORTHO05D003199 1.4e-10 71.2 115 43.5
Oeu013260.3 Olea europaea HOM05D002788 ORTHO05D003199 1.4e-10 71.2 118 48.3
Haze_15347 Corylus avellana HOM05D002788 ORTHO05D003199 1.8e-10 70.9 136 40.4
FAN28G0140 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.8e-10 70.9 115 43.5
FAN28G0483 Fragaria x ananassa HOM05D002788 ORTHO05D025609 1.8e-10 70.9 115 43.5
CBR_g29291 Chara braunii HOM05D002788 ORTHO05D000231 2.3e-10 70.5 91 48.4
Thhalv10008162m.g Eutrema salsugineum HOM05D002788 ORTHO05D003199 2.3e-10 70.5 102 41.2
FAN28G2798 Fragaria x ananassa HOM05D002788 ORTHO05D003199 3.9e-10 69.7 97 46.4
FAN23G1420 Fragaria x ananassa HOM05D002788 ORTHO05D003199 5.1e-10 69.3 97 46.4
C08p53170 Brassica napus HOM05D002788 ORTHO05D003199 8.8e-10 68.6 108 40.7
BolC8t52832H Brassica oleracea HOM05D002788 ORTHO05D003199 8.8e-10 68.6 108 40.7
PSO013G0071 Papaver somniferum HOM05D002788 ORTHO05D005138 2.6e-09 67.0 87 54.0
Rhsim06G0056800 Rhododendron simsii HOM05D002788 ORTHO05D003199 4.4e-09 66.2 85 45.9
Cc07_g06470 Coffea canephora HOM05D002788 ORTHO05D003199 5.7e-09 65.9 136 39.0
FAN26G1262 Fragaria x ananassa HOM05D002788 ORTHO05D003199 5.7e-09 65.9 146 37.0
A09p68560 Brassica napus HOM05D002788 ORTHO05D003199 7.4e-09 65.5 102 42.2
BraA09t42199Z Brassica rapa HOM05D002788 ORTHO05D003199 7.4e-09 65.5 102 42.2
CAN.G1621.7 Capsicum annuum HOM05D002788 ORTHO05D003199 7.4e-09 65.5 104 46.2
Nitab4.5_0001984g0110 Nicotiana tabacum HOM05D002788 ORTHO05D003199 9.7e-09 65.1 110 40.0
HanXRQChr02g0038051 Helianthus annuus HOM05D002788 ORTHO05D003199 1.3e-08 64.7 101 43.6
Sabra07G0043800 Salix brachista HOM05D002788 ORTHO05D003199 1.3e-08 64.7 64 57.8
SGA_v2.0_scaffold28G11788 Striga asiatica HOM05D002788 ORTHO05D003199 1.3e-08 64.7 91 48.4
AUR62003942 Chenopodium quinoa HOM05D002788 ORTHO05D003199 1.7e-08 64.3 113 44.2
Nn5g30424 Nelumbo nucifera HOM05D002788 ORTHO05D003199 1.7e-08 64.3 78 53.8
PSO832G0699 Papaver somniferum HOM05D002788 ORTHO05D005138 1.7e-08 64.3 108 45.4
VMungo0251G1374 Vigna mungo HOM05D002788 ORTHO05D003199 2.8e-08 63.5 136 41.9
CiPaw.02G005900 Carya illinoinensis HOM05D002788 ORTHO05D003199 8.2e-08 62.0 84 52.4
SalBow5G0517 Salvia bowleyana HOM05D002788 ORTHO05D003199 1.4e-07 61.2 71 54.9
SalBow5G0895 Salvia bowleyana HOM05D002788 ORTHO05D003199 1.4e-07 61.2 71 54.9
Nitab4.5_0007681g0010 Nicotiana tabacum HOM05D002788 ORTHO05D003199 1.8e-07 60.8 110 38.2
Aa31LG6G14140 Aethionema arabicum HOM05D002788 ORTHO05D005934 4.1e-07 59.7 113 38.9
COL.COLO4_11487 Corchorus olitorius HOM05D002788 ORTHO05D003199 4.1e-07 59.7 132 38.6
Rhsim10G0111900 Rhododendron simsii HOM05D002788 ORTHO05D003199 9.1e-07 58.5 71 54.9
Lsat_1_v5_gn_1_23200 Lactuca sativa HOM05D002788 ORTHO05D003199 3.4e-06 56.6 86 44.2
Lj7A78G57 Lonicera japonica HOM05D002788 ORTHO05D003199 3.4e-06 56.6 102 45.1
Actinidia12014 Actinidia chinensis HOM05D002788 ORTHO05D003199 4.5e-06 56.2 46 56.5


User provided reference genes

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