Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0027023 Lotus japonicus HOM05D005136 ORTHO05D006619 2.1e-46 188.7 97 100.0
VMungo1215G0362 Vigna mungo HOM05D005136 ORTHO05D006619 3.4e-25 118.2 145 52.4
Lj3g0003138 Lotus japonicus HOM05D005136 ORTHO05D006619 2.2e-24 115.5 144 52.8
Glyma.04G123300 Glycine max HOM05D005136 ORTHO05D006619 6.4e-24 114.0 145 50.3
Phvul.002G127500 Phaseolus vulgaris HOM05D005136 ORTHO05D006619 1.9e-23 112.5 145 51.0
QL11p043069 Quercus lobata HOM05D005136 ORTHO05D006619 1.3e-21 106.3 142 49.3
Lalb_Chr19g0138591 Lupinus albus HOM05D005136 ORTHO05D006619 6.7e-21 104.0 145 46.9
Potri.004G152700 Populus trichocarpa HOM05D005136 ORTHO05D006619 8.7e-21 103.6 145 47.6
Ca_15377_v3 Cicer arietinum L. HOM05D005136 ORTHO05D006619 1.1e-20 103.2 145 47.6
Sed0024996 Sechium edule HOM05D005136 ORTHO05D006619 4.3e-20 101.3 145 46.9
COL.COLO4_32439 Corchorus olitorius HOM05D005136 ORTHO05D006619 5.6e-20 100.9 143 46.9
Glyma.09G214900 Glycine max HOM05D005136 ORTHO05D006619 9.6e-20 100.1 62 82.3
Duzib132G0024 Durio zibethinus HOM05D005136 ORTHO05D006619 1.3e-19 99.8 142 47.2
FvH4_2g08450 Fragaria vesca HOM05D005136 ORTHO05D006619 1.6e-19 99.4 144 46.5
FAN24G0166 Fragaria x ananassa HOM05D005136 ORTHO05D006619 1.6e-19 99.4 144 46.5
RcHm_v2.0_Chr6g0263731 Rosa chinensis HOM05D005136 ORTHO05D006619 1.6e-19 99.4 144 46.5
CiPaw.05G062700 Carya illinoinensis HOM05D005136 ORTHO05D006619 2.8e-19 98.6 142 47.2
FAN27G1698 Fragaria x ananassa HOM05D005136 ORTHO05D006619 2.8e-19 98.6 144 45.8
CiPaw.06G136800 Carya illinoinensis HOM05D005136 ORTHO05D006619 3.7e-19 98.2 142 47.9
FAN15G2434 Fragaria x ananassa HOM05D005136 ORTHO05D006619 3.7e-19 98.2 144 45.8
Psat5g103000 Pisum sativum HOM05D005136 ORTHO05D006619 3.7e-19 98.2 139 47.5
Thecc.02G123900 Theobroma cacao HOM05D005136 ORTHO05D006619 4.8e-19 97.8 144 45.8
CsaV3_2G014570 Cucumis sativus L. HOM05D005136 ORTHO05D006619 6.2e-19 97.4 145 46.2
Cpa.g.sc31.66 Carica papaya HOM05D005136 ORTHO05D006619 8.2e-19 97.1 144 45.1
ClCG11G004520 Citrullus lanatus HOM05D005136 ORTHO05D006619 8.2e-19 97.1 145 45.5
Medtr3g116260 Medicago truncatula HOM05D005136 ORTHO05D006619 8.2e-19 97.1 147 45.6
MD05G1068400 Malus domestica HOM05D005136 ORTHO05D006619 1.1e-18 96.7 143 45.5
Cfa005022 Carpinus fangiana HOM05D005136 ORTHO05D006619 1.8e-18 95.9 144 45.8
Haze_02365 Corylus avellana HOM05D005136 ORTHO05D006619 1.8e-18 95.9 144 45.8
Lalb_Chr23g0265461 Lupinus albus HOM05D005136 ORTHO05D006619 1.8e-18 95.9 145 44.1
Dinv23543 Davidia involucrata HOM05D005136 ORTHO05D006619 3.1e-18 95.1 144 43.8
Gohir.A12G017900 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.1e-18 95.1 144 44.4
MD10G1078600 Malus domestica HOM05D005136 ORTHO05D006619 4.0e-18 94.7 143 44.8
vmacro08119 Vaccinium macrocarpon HOM05D005136 ORTHO05D006619 6.9e-18 94.0 144 45.8
Psat5g007800 Pisum sativum HOM05D005136 ORTHO05D006619 1.2e-17 93.2 140 47.1
Hund22263 Selenicereus undatus HOM05D005136 ORTHO05D006619 1.2e-17 93.2 143 44.8
Lj5P199T42 Lonicera japonica HOM05D005136 ORTHO05D006619 2.0e-17 92.4 141 44.0
Nitab4.5_0009564g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.0e-17 92.4 145 43.4
TPR.G21542 Trifolium pratense HOM05D005136 ORTHO05D006619 3.4e-17 91.7 131 48.1
DCAR_026977 Daucus carota HOM05D005136 ORTHO05D006619 7.6e-17 90.5 142 43.7
Peaxi162Scf00346g00043 Petunia axillaris HOM05D005136 ORTHO05D006619 1.0e-16 90.1 144 44.4
Nn1g02125 Nelumbo nucifera HOM05D005136 ORTHO05D006619 1.3e-16 89.7 144 43.1
Rhsim11G0174400 Rhododendron simsii HOM05D005136 ORTHO05D006619 1.3e-16 89.7 144 44.4
Cc02_g17760 Coffea canephora HOM05D005136 ORTHO05D006619 2.2e-16 89.0 143 44.1
Cc02_g20820 Coffea canephora HOM05D005136 ORTHO05D006619 2.2e-16 89.0 143 44.1
Dinv42084 Davidia involucrata HOM05D005136 ORTHO05D006619 2.2e-16 89.0 144 43.1
Aqoxy5G01670 Aquilegia oxysepala HOM05D005136 ORTHO05D006619 2.9e-16 88.6 145 42.8
MBI16_g37741_MAGBIO Magnolia biondii HOM05D005136 ORTHO05D006619 2.9e-16 88.6 142 43.0
Medtr3g116310 Medicago truncatula HOM05D005136 ORTHO05D006619 2.9e-16 88.6 63 74.6
Prupe.8G100500 Prunus persica HOM05D005136 ORTHO05D006619 2.9e-16 88.6 62 74.2
RcHm_v2.0_Chr6g0264001 Rosa chinensis HOM05D005136 ORTHO05D006619 6.5e-16 87.4 62 72.6
CSS0002049 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 8.4e-16 87.0 144 42.4
CSS0016345 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 8.4e-16 87.0 144 42.4
CSS0049550 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 8.4e-16 87.0 144 42.4
CAN.G1312.12 Capsicum annuum HOM05D005136 ORTHO05D006619 8.4e-16 87.0 144 42.4
MELO3C020986.2 Cucumis melo HOM05D005136 ORTHO05D006619 1.1e-15 86.7 62 74.2
Gohir.D02G202838 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.1e-15 86.7 133 44.4
Gorai.005G228100 Gossypium raimondii HOM05D005136 ORTHO05D006619 1.1e-15 86.7 133 44.4
CANSAT11G0677 Cannabis sativa HOM05D005136 ORTHO05D006619 1.4e-15 86.3 62 71.0
Hma1.2p1_1375F.1_g278970 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.4e-15 86.3 145 41.4
Hma1.2p1_3179F.1_g333696 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.4e-15 86.3 145 41.4
Atru.chr8.1229 Acer truncatum HOM05D005136 ORTHO05D006619 3.2e-15 85.1 62 71.0
Gohir.A03G179300 Gossypium hirsutum HOM05D005136 ORTHO05D006619 3.2e-15 85.1 133 43.6
Manes.17G099700 Manihot esculenta HOM05D005136 ORTHO05D006619 3.2e-15 85.1 69 65.2
TWI79G0765 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 3.2e-15 85.1 65 69.2
Oeu014338.1 Olea europaea HOM05D005136 ORTHO05D006619 5.5e-15 84.3 62 66.1
EL10Ac9g21088 Beta vulgaris HOM05D005136 ORTHO05D006619 7.1e-15 84.0 62 69.4
Gohir.D12G018500 Gossypium hirsutum HOM05D005136 ORTHO05D006619 7.1e-15 84.0 65 66.2
Gorai.008G018800 Gossypium raimondii HOM05D005136 ORTHO05D006619 7.1e-15 84.0 65 66.2
Actinidia00512 Actinidia chinensis HOM05D005136 ORTHO05D006619 9.3e-15 83.6 62 69.4
Ah.01g016850 Amaranthus hybridus HOM05D005136 ORTHO05D006619 1.6e-14 82.8 143 42.0
CSS0025161 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 1.6e-14 82.8 144 41.0
TAR625G1013 Trochodendron aralioides HOM05D005136 ORTHO05D006619 1.6e-14 82.8 144 41.0
TWI31G0294 Tripterygium wilfordii HOM05D005136 ORTHO05D006619 2.1e-14 82.4 65 67.7
THA.LOC104823526 Tarenaya hassleriana HOM05D005136 ORTHO05D006619 2.7e-14 82.0 145 39.3
Ciclev10029521m.g Citrus clementina HOM05D005136 ORTHO05D006619 3.5e-14 81.6 62 67.7
Nitab4.5_0002601g0030 Nicotiana tabacum HOM05D005136 ORTHO05D006619 3.5e-14 81.6 62 67.7
PSO700G0271 Papaver somniferum HOM05D005136 ORTHO05D006619 3.5e-14 81.6 143 42.0
Psat4g095600 Pisum sativum HOM05D005136 ORTHO05D006619 4.6e-14 81.3 62 67.7
ATR1120G109 Amborella trichopoda HOM05D005136 ORTHO05D006619 7.9e-14 80.5 147 39.5
SalBow6G1117 Salvia bowleyana HOM05D005136 ORTHO05D006619 7.9e-14 80.5 62 64.5
SalBow6G6037 Salvia bowleyana HOM05D005136 ORTHO05D006619 7.9e-14 80.5 62 64.5
Migut.B00252 Erythranthe guttata HOM05D005136 ORTHO05D006619 1.0e-13 80.1 62 64.5
PGR042G3747 Punica granatum HOM05D005136 ORTHO05D006619 1.0e-13 80.1 62 69.4
Hma1.2p1_0854F.1_g228935 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.8e-13 79.3 65 61.5
Hma1.2p1_2665F.1_g326510 Hydrangea macrophylla HOM05D005136 ORTHO05D006619 1.8e-13 79.3 65 61.5
SGA_v2.0_scaffold106G30693 Striga asiatica HOM05D005136 ORTHO05D006619 1.8e-13 79.3 62 64.5
Aa31LG1G2990 Aethionema arabicum HOM05D005136 ORTHO05D006619 2.3e-13 79.0 62 64.5
Sp1g10380 Schrenkiella parvula HOM05D005136 ORTHO05D006619 2.3e-13 79.0 62 64.5
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.0e-13 78.6 62 62.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.0e-13 78.6 62 62.9
Nn1g05055 Nelumbo nucifera HOM05D005136 ORTHO05D006619 3.0e-13 78.6 62 64.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 3.9e-13 78.2 62 62.9
CSS0021040 Camellia sinensis var. sinensis HOM05D005136 ORTHO05D006619 3.9e-13 78.2 132 41.7
Sopen08g026750 Solanum pennellii HOM05D005136 ORTHO05D006619 3.9e-13 78.2 62 66.1
PGSC0003DMG400026262 Solanum tuberosum HOM05D005136 ORTHO05D006619 3.9e-13 78.2 62 66.1
TAR628G0554 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.9e-13 78.2 65 63.1
TAR628G1226 Trochodendron aralioides HOM05D005136 ORTHO05D006619 3.9e-13 78.2 65 63.1
HPP92_013432 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.9e-13 78.2 62 64.5
HPP92_027116 Vanilla planifolia HOM05D005136 ORTHO05D006619 3.9e-13 78.2 62 64.5
Eucgr.G00447 Eucalyptus grandis HOM05D005136 ORTHO05D006619 5.1e-13 77.8 62 66.1
BcaB03g13232 Brassica carinata HOM05D005136 ORTHO05D006619 6.7e-13 77.4 62 61.3
Solyc08g078240.4 Solanum lycopersicum HOM05D005136 ORTHO05D006619 8.7e-13 77.0 62 64.5
AT1G11760 Arabidopsis thaliana HOM05D005136 ORTHO05D006619 1.1e-12 76.6 62 62.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.5e-12 76.3 62 59.7
Sc09g0004050 Simmondsia chinensis HOM05D005136 ORTHO05D006619 1.5e-12 76.3 62 66.1
Carub.0001s1142 Capsella rubella HOM05D005136 ORTHO05D006619 1.9e-12 75.9 62 61.3
Thhalv10008721m.g Eutrema salsugineum HOM05D005136 ORTHO05D006619 1.9e-12 75.9 62 62.9
AL1G22940 Arabidopsis lyrata HOM05D005136 ORTHO05D006619 2.5e-12 75.5 62 61.3
AUR62038311 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.5e-12 75.5 69 55.1
MSTRG.16796 Avicennia marina HOM05D005136 ORTHO05D006619 3.3e-12 75.1 62 61.3
CARHR012080 Cardamine hirsuta HOM05D005136 ORTHO05D006619 3.3e-12 75.1 62 61.3
HanXRQChr05g0152051 Helianthus annuus HOM05D005136 ORTHO05D006619 3.3e-12 75.1 69 56.5
Lsat_1_v5_gn_7_89621 Lactuca sativa HOM05D005136 ORTHO05D006619 9.7e-12 73.6 69 53.6
Prupe.5G020100 Prunus persica HOM05D005136 ORTHO05D006619 1.6e-11 72.8 65 61.5
AUR62023928 Chenopodium quinoa HOM05D005136 ORTHO05D006619 2.2e-11 72.4 69 53.6
COL.COLO4_32440 Corchorus olitorius HOM05D005136 ORTHO05D006619 2.8e-11 72.0 65 58.5
Nitab4.5_0002541g0070 Nicotiana tabacum HOM05D005136 ORTHO05D024799 3.7e-11 71.6 95 46.3
Gohir.A03G179400 Gossypium hirsutum HOM05D005136 ORTHO05D006619 6.3e-11 70.9 62 61.3
CDE02G3080 Ceratophyllum demersum HOM05D005136 ORTHO05D006619 8.2e-11 70.5 61 60.7
Oeu014337.1 Olea europaea HOM05D005136 ORTHO05D006619 1.4e-10 69.7 65 50.8
Thecc.02G123800 Theobroma cacao HOM05D005136 ORTHO05D006619 1.8e-10 69.3 62 58.1
ECA236G0931 Erigeron canadensis HOM05D005136 ORTHO05D006619 2.4e-10 68.9 70 50.0
Nitab4.5_0012262g0010 Nicotiana tabacum HOM05D005136 ORTHO05D006619 2.4e-10 68.9 79 49.4
Gorai.005G228200 Gossypium raimondii HOM05D005136 ORTHO05D006619 9.0e-10 67.0 62 58.1
Gohir.D02G202857 Gossypium hirsutum HOM05D005136 ORTHO05D006619 1.2e-09 66.6 62 56.5
Sp2g23220 Schrenkiella parvula HOM05D005136 ORTHO05D006619 1.5e-09 66.2 62 58.1
unitig_37.g12818 Utricularia gibba HOM05D005136 ORTHO05D006619 5.9e-09 64.3 62 54.8
Os10g0548400 Oryza sativa ssp. japonica HOM05D005136 ORTHO05D006619 2.9e-08 62.0 65 50.8
BcaB08g37416 Brassica carinata HOM05D005136 ORTHO05D006619 3.8e-08 61.6 62 54.8
Pp3c10_12480 Physcomitrium patens HOM05D005136 ORTHO05D006619 1.1e-07 60.1 69 46.4
CAN.G1435.13 Capsicum annuum HOM05D005136 ORTHO05D024799 4.2e-07 58.2 80 43.8
Zm00001eb284000 Zea mays HOM05D005136 ORTHO05D006619 7.2e-07 57.4 66 48.5
Os07g0229100 Oryza sativa ssp. japonica HOM05D011003 ORTHO05D012370 1.2e-06 56.6 63 47.6
EL10Ac1g02225 Beta vulgaris HOM05D005136 ORTHO05D006619 6.1e-06 54.3 132 35.6
SHI23962 Sapria himalayana HOM05D005136 ORTHO05D006619 6.1e-06 54.3 50 56.0


User provided reference genes

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