Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.1e-281 972.6 465 100.0
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 6.9e-233 810.4 465 82.6
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.7e-223 779.2 466 79.4
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 3.8e-223 778.1 479 76.4
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 1.1e-219 766.5 467 78.8
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 4.8e-218 761.1 465 78.5
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 7.4e-211 737.3 460 74.1
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 3.7e-210 734.9 460 74.1
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 5.2e-196 688.0 429 75.8
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 3.3e-190 668.7 464 67.9
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 8.0e-189 664.1 461 67.2
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 4.0e-188 661.8 460 67.0
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 2.0e-187 659.4 399 77.7
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 2.2e-186 656.0 457 66.5
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 4.9e-186 654.8 461 66.6
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 7.0e-185 651.0 464 65.9
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.0e-184 649.4 464 65.1
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 1.0e-183 647.1 466 64.6
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 9.5e-182 640.6 393 75.1
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.2e-181 640.2 461 65.1
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 1.4e-177 626.7 465 62.4
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.7e-175 619.8 468 62.2
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 1.7e-175 619.8 463 61.1
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 2.3e-175 619.4 463 61.6
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 2.3e-175 619.4 460 63.5
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 6.6e-175 617.8 460 62.2
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 8.6e-175 617.5 468 62.0
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 1.6e-173 613.2 423 66.7
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 7.5e-171 604.4 477 61.0
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.9e-170 602.4 477 60.6
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 2.9e-170 602.4 462 60.2
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 3.7e-170 602.1 461 59.9
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.4e-169 600.1 464 61.2
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 5.4e-169 598.2 504 58.7
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 5.4e-169 598.2 463 60.9
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.2e-168 597.0 463 60.9
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 7.8e-168 594.3 459 59.0
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.6e-167 591.3 476 59.9
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 4.3e-166 588.6 454 60.6
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 9.5e-166 587.4 462 61.5
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 9.5e-166 587.4 466 60.7
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 9.5e-166 587.4 458 59.2
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 3.6e-165 585.5 443 61.9
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 1.5e-163 580.1 462 60.6
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 2.0e-163 579.7 455 57.1
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.4e-163 578.6 460 57.8
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 9.9e-163 577.4 465 57.4
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 9.9e-163 577.4 464 56.2
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 2.4e-161 572.8 476 58.6
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 4.1e-161 572.0 434 60.6
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 1.2e-160 570.5 490 56.1
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 3.5e-160 568.9 468 58.3
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 6.0e-160 568.2 458 55.9
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 1.1e-158 563.9 463 55.7
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 4.3e-158 562.0 463 55.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 3.1e-156 555.8 440 57.3
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 6.8e-156 554.7 461 55.3
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 6.8e-156 554.7 461 55.3
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 1.3e-154 550.4 487 52.6
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 2.2e-154 549.7 486 52.7
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 4.9e-154 548.5 467 54.6
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 1.1e-153 547.4 483 53.2
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 2.4e-153 546.2 347 72.0
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 8.1e-149 531.2 445 58.7
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 1.8e-148 530.0 421 59.9
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.9e-145 520.0 346 68.5
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 3.2e-145 519.2 405 60.5
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 2.7e-144 516.2 515 50.9
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 4.0e-140 502.3 473 51.6
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 5.3e-140 501.9 376 63.8
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 2.0e-139 500.0 507 49.1
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 4.2e-137 492.3 581 45.6
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 9.3e-137 491.1 541 47.5
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 2.8e-133 479.6 347 64.3
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 2.0e-131 473.4 346 60.1
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 6.5e-130 468.4 460 51.3
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 1.2e-128 464.2 555 46.3
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 1.6e-128 463.8 374 60.2
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 2.3e-127 459.9 442 50.7
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.0e-127 459.5 391 57.3
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 6.7e-127 458.4 346 61.6
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 4.8e-125 452.2 381 58.8
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 1.0e-114 417.9 396 51.3
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 3.2e-113 412.9 376 53.7
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 3.4e-107 392.9 457 44.9
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 7.7e-107 391.7 458 46.7
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 4.7e-104 382.5 411 48.4
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 1.8e-100 370.5 250 74.4
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 5.7e-94 349.0 422 44.5
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.1e-89 334.7 303 56.1
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 1.4e-87 327.8 259 57.5
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 2.3e-87 327.0 257 63.0
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 3.0e-87 326.6 219 66.7
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 8.8e-87 325.1 454 40.1
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.9e-81 307.4 199 69.8
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 1.2e-80 304.7 244 61.9
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-78 297.7 294 50.7
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.5e-78 297.7 495 37.0
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 7.0e-76 288.9 261 55.2
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 1.9e-73 280.8 263 51.7
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 1.5e-65 254.6 169 68.0
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.5e-65 254.6 223 54.3
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 5.2e-63 246.1 495 30.7
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 4.3e-57 226.5 418 32.3
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 4.7e-56 223.0 160 66.2
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 4.0e-55 219.9 160 65.6
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 2.4e-44 184.1 232 41.8
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 4.4e-38 163.3 300 33.7
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 2.7e-35 154.1 173 44.5
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 1.7e-34 151.4 252 36.1
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 2.5e-33 147.5 174 44.8
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 4.0e-31 140.2 80 76.2
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 3.4e-30 137.1 150 46.7
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 4.5e-30 136.7 91 65.9
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 7.6e-30 136.0 372 28.2
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 1.3e-26 125.2 104 56.7
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 6.7e-26 122.9 94 63.8
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 1.4e-23 115.2 132 45.5
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 1.8e-23 114.8 86 60.5
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 4.5e-22 110.2 107 54.2
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 2.9e-21 107.5 111 50.5
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 8.4e-21 105.9 117 44.4
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-20 105.5 66 69.7
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.5e-17 94.4 270 25.9
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 4.3e-17 93.6 96 49.0
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 1.3e-16 92.0 88 50.0
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 8.1e-16 89.4 222 26.6
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 1.4e-12 78.6 83 48.2
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.0e-10 72.4 94 40.4
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.9e-09 68.2 40 70.0
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 3.1e-07 60.8 87 41.4


User provided reference genes

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