Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.8e-237 825.5 408 100.0
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.7e-188 662.1 430 77.4
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 5.0e-187 657.9 432 77.1
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 6.8e-184 647.5 425 76.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 2.2e-182 642.5 430 76.0
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 4.9e-182 641.3 430 76.3
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.1e-181 640.2 432 74.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.4e-181 639.0 434 74.7
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 4.7e-177 624.8 433 73.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 4.7e-177 624.8 430 72.3
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 6.2e-177 624.4 424 75.7
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 3.1e-176 622.1 406 77.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 4.0e-176 621.7 434 73.5
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 2.9e-174 615.5 423 74.0
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 9.2e-173 610.5 435 70.8
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 8.6e-171 604.0 422 71.1
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 4.7e-169 598.2 435 70.3
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 8.1e-169 597.4 408 72.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 4.0e-168 595.1 426 71.6
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 3.4e-167 592.0 433 69.1
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.9e-166 588.2 433 69.1
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.9e-165 586.3 432 68.1
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.4e-165 585.9 438 68.9
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 5.4e-165 584.7 401 74.8
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.2e-164 583.6 434 69.4
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.0e-163 580.5 429 69.2
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.0e-163 580.5 433 69.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-163 580.1 429 68.8
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.7e-163 579.7 435 66.9
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.3e-163 579.3 432 67.4
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 3.0e-163 578.9 435 67.8
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 6.6e-163 577.8 434 66.6
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 2.5e-162 575.9 415 70.1
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.3e-162 575.5 438 67.6
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 4.3e-162 575.1 435 65.7
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 4.3e-162 575.1 428 66.4
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 7.3e-162 574.3 430 67.7
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 9.6e-162 573.9 432 66.7
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 9.6e-162 573.9 433 68.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.6e-161 573.2 433 66.1
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 4.7e-161 571.6 430 67.4
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.1e-160 570.5 437 67.3
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.8e-160 569.7 434 67.5
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.8e-160 569.7 438 66.9
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 6.9e-160 567.8 398 72.9
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 6.9e-160 567.8 429 66.7
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.2e-159 567.0 433 67.2
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.5e-159 566.6 438 65.3
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.5e-159 566.6 433 67.0
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.4e-159 565.5 434 66.8
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.8e-158 562.0 434 65.7
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 6.4e-158 561.2 428 66.1
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 3.2e-157 558.9 429 64.8
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 3.2e-157 558.9 421 67.0
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 5.4e-157 558.1 437 65.0
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 7.1e-157 557.8 421 67.2
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.6e-156 556.6 429 64.6
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.5e-156 555.4 435 65.5
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 4.6e-156 555.1 429 65.0
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.7e-155 553.1 430 65.1
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.3e-155 552.7 411 66.9
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 2.3e-155 552.7 430 65.1
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 3.9e-155 552.0 424 66.5
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 6.6e-155 551.2 430 65.1
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.7e-155 550.8 421 66.7
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.7e-155 550.8 421 66.7
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 8.7e-155 550.8 425 64.7
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.3e-154 548.5 429 66.7
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 9.6e-154 547.4 430 65.6
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 2.1e-153 546.2 425 64.5
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.6e-153 545.4 421 66.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 8.1e-153 544.3 425 64.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 4.0e-152 542.0 427 64.4
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 4.0e-152 542.0 427 64.4
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.2e-151 540.4 428 63.3
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 3.4e-151 538.9 432 61.3
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.8e-150 535.4 426 63.8
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 4.9e-150 535.0 432 63.4
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 8.4e-150 534.3 426 62.9
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.4e-149 533.5 349 77.1
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.9e-149 533.1 443 61.6
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 9.3e-149 530.8 419 64.2
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 2.1e-148 529.6 427 63.0
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 2.1e-148 529.6 425 64.9
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 4.6e-148 528.5 415 62.9
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.8e-147 526.6 414 64.0
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 2.3e-147 526.2 435 60.5
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 2.3e-147 526.2 437 62.7
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 6.7e-147 524.6 428 62.1
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.9e-146 523.1 419 64.0
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.9e-146 523.1 383 70.8
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.1e-145 519.6 409 66.7
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.1e-145 519.6 409 66.7
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 4.8e-145 518.5 416 63.5
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 8.1e-145 517.7 418 62.9
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 1.1e-144 517.3 416 64.4
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 2.4e-144 516.2 426 62.2
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 6.9e-144 514.6 422 63.5
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 6.9e-144 514.6 427 62.5
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 6.9e-144 514.6 413 63.9
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.0e-143 513.1 406 66.5
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 4.5e-143 511.9 416 64.7
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 4.5e-143 511.9 416 64.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.9e-142 509.2 441 60.1
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 7.1e-141 504.6 416 62.5
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.2e-140 503.8 362 67.4
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 4.6e-140 501.9 406 65.3
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 6.0e-140 501.5 413 62.2
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 7.9e-140 501.1 433 60.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.1e-137 493.0 427 60.9
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.7e-137 492.3 349 70.8
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.4e-136 490.3 351 68.7
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.4e-136 489.6 420 58.1
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.0e-136 488.8 427 60.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.0e-135 486.5 412 61.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.0e-134 484.2 420 57.9
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 2.5e-133 479.6 341 70.1
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 3.2e-133 479.2 408 59.1
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 9.3e-133 477.6 423 57.2
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.3e-131 473.8 331 68.3
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.6e-129 466.8 421 60.3
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 5.3e-128 461.8 348 64.4
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 1.2e-127 460.7 412 60.0
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.6e-116 423.7 328 64.3
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 2.7e-116 422.9 332 64.5
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.8e-115 420.2 411 56.7
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 3.9e-115 419.1 318 65.7
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 5.7e-106 388.7 381 54.9
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-102 377.1 326 59.8
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-102 377.1 326 59.8
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.0e-99 366.3 423 48.2
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 9.7e-98 361.3 360 52.2
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.6e-90 336.7 223 74.0
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 8.6e-78 295.0 192 75.5
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 4.3e-69 266.2 375 43.5
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.7e-63 246.9 242 54.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.0e-58 230.7 138 79.0
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.6e-52 211.1 163 62.6
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 5.8e-50 202.6 258 46.1
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.9e-37 161.0 140 53.6
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 6.2e-36 156.0 106 69.8
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 6.4e-33 146.0 164 53.7
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 3.0e-30 137.1 109 68.8
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 4.3e-29 133.3 110 65.5
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.6e-23 114.8 99 56.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 8.5e-09 65.9 42 64.3
AUR62011541 Chenopodium quinoa HOM05D000076 ORTHO05D006651 3.0e-06 57.4 323 22.0
Sp1g39180 Schrenkiella parvula HOM05D000076 ORTHO05D006651 8.8e-06 55.8 330 23.0


User provided reference genes

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