Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 2.1e-42 175.3 88 100.0
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.4e-25 119.4 87 67.8
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 9.0e-25 116.7 87 65.5
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 2.0e-24 115.5 87 63.2
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 3.4e-24 114.8 87 66.7
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.7e-23 112.5 88 67.0
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.4e-22 109.4 87 58.6
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 4.2e-22 107.8 87 63.2
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 4.6e-21 104.4 89 57.3
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.9e-20 101.3 85 58.8
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 8.2e-18 93.6 86 57.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 6.9e-17 90.5 87 55.2
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.4e-12 76.3 92 44.6
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.4e-12 76.3 52 63.5
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-12 75.9 93 38.7
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 1.8e-12 75.9 94 40.4
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 3.0e-12 75.1 81 45.7
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 3.9e-12 74.7 85 41.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 5.1e-12 74.3 92 45.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 6.7e-12 73.9 87 43.7
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 8.8e-12 73.6 92 40.2
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.8e-12 73.6 92 40.2
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 8.8e-12 73.6 88 44.3
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 8.8e-12 73.6 63 49.2
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 8.8e-12 73.6 63 49.2
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.5e-11 72.8 88 40.9
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.5e-11 72.8 51 51.0
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.5e-11 72.0 52 55.8
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.5e-11 72.0 52 55.8
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.3e-11 71.6 96 38.5
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-11 71.6 87 40.2
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.3e-11 71.6 78 46.2
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.3e-11 71.2 87 41.4
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.7e-11 70.9 84 40.5
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.7e-11 70.9 68 48.5
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 5.7e-11 70.9 48 60.4
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.4e-11 70.5 71 47.9
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.4e-11 70.5 86 36.0
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.3e-10 69.7 79 41.8
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-10 69.7 94 39.4
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-10 69.7 94 39.4
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.3e-10 69.7 69 44.9
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-10 69.7 83 41.0
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-10 69.7 83 41.0
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.3e-10 69.7 98 42.9
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.3e-10 69.7 97 40.2
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.7e-10 69.3 94 38.3
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-10 69.3 87 39.1
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.7e-10 69.3 94 38.3
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.7e-10 69.3 94 44.7
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.7e-10 69.3 94 38.3
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-10 68.9 55 49.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.2e-10 68.9 77 40.3
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 2.2e-10 68.9 94 41.5
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.2e-10 68.9 92 34.8
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 2.2e-10 68.9 66 45.5
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 2.8e-10 68.6 50 52.0
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-10 68.6 82 36.6
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.8e-10 68.6 97 39.2
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 3.7e-10 68.2 90 40.0
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 3.7e-10 68.2 84 40.5
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.7e-10 68.2 94 43.6
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 3.7e-10 68.2 55 47.3
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.8e-10 67.8 95 38.9
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.8e-10 67.8 88 39.8
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-10 67.8 82 36.6
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-10 67.8 84 40.5
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.8e-10 67.8 82 36.6
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 4.8e-10 67.8 82 40.2
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 6.3e-10 67.4 84 36.9
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 6.3e-10 67.4 95 38.9
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 6.3e-10 67.4 95 38.9
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 6.3e-10 67.4 91 38.5
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 6.3e-10 67.4 85 38.8
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 8.2e-10 67.0 89 37.1
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 8.2e-10 67.0 48 58.3
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-09 66.6 62 40.3
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.1e-09 66.6 87 44.8
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-09 66.6 92 42.4
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.1e-09 66.6 92 37.0
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.1e-09 66.6 53 50.9
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.4e-09 66.2 82 40.2
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.4e-09 66.2 82 40.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.4e-09 66.2 94 42.6
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.4e-09 66.2 74 39.2
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-09 66.2 80 40.0
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.4e-09 66.2 83 39.8
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.4e-09 66.2 53 50.9
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 1.8e-09 65.9 90 38.9
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 93 37.6
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 51 49.0
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 95 38.9
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.8e-09 65.9 84 44.0
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 2.4e-09 65.5 95 37.9
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 2.4e-09 65.5 97 38.1
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 2.4e-09 65.5 91 38.5
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 2.4e-09 65.5 53 49.1
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 3.1e-09 65.1 79 45.6
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 3.1e-09 65.1 88 40.9
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.1e-09 65.1 86 36.0
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 3.1e-09 65.1 51 49.0
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.1e-09 65.1 78 44.9
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-09 64.7 51 43.1
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.1e-09 64.7 93 37.6
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.1e-09 64.7 84 44.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.3e-09 64.3 88 38.6
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.3e-09 64.3 94 37.2
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.3e-09 64.3 94 37.2
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 5.3e-09 64.3 90 36.7
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 5.3e-09 64.3 90 36.7
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 5.3e-09 64.3 75 44.0
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 5.3e-09 64.3 51 47.1
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 6.9e-09 63.9 90 34.4
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 6.9e-09 63.9 88 37.5
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 6.9e-09 63.9 86 37.2
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 6.9e-09 63.9 78 44.9
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 6.9e-09 63.9 62 40.3
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.1e-09 63.5 65 40.0
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.1e-09 63.5 88 37.5
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.1e-09 63.5 92 37.0
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 9.1e-09 63.5 88 36.4
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.2e-08 63.2 90 38.9
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-08 63.2 82 41.5
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-08 63.2 56 46.4
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.5e-08 62.8 51 43.1
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.5e-08 62.8 92 37.0
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.0e-08 62.4 81 39.5
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-08 62.4 88 38.6
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.6e-08 62.0 51 43.1
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.6e-08 62.0 55 52.7
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 3.4e-08 61.6 75 40.0
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 3.4e-08 61.6 50 46.0
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.4e-08 61.6 79 38.0
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.5e-08 61.2 95 34.7
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.9e-08 60.8 50 48.0
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.9e-08 60.8 82 35.4
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 5.9e-08 60.8 83 39.8
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.7e-08 60.5 82 39.0
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 7.7e-08 60.5 54 46.3
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 7.7e-08 60.5 49 49.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-07 60.1 96 32.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.0e-07 60.1 90 35.6
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.3e-07 59.7 82 37.8
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-07 59.7 90 35.6
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-07 59.7 81 37.0
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.3e-07 59.7 92 38.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.7e-07 59.3 43 53.5
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.7e-07 59.3 81 37.0
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-07 58.9 54 38.9
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.2e-07 58.9 82 34.1
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 2.9e-07 58.5 88 35.2
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 2.9e-07 58.5 49 40.8
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 2.9e-07 58.5 87 33.3
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.0e-07 57.8 61 41.0
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 5.0e-07 57.8 54 44.4
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-07 57.8 83 37.3
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.0e-07 57.8 90 32.2
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.5e-07 57.4 65 41.5
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.5e-07 57.4 80 31.2
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 8.5e-07 57.0 92 32.6
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.5e-07 57.0 90 36.7
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 8.5e-07 57.0 92 34.8
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 8.5e-07 57.0 50 44.0
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.1e-06 56.6 52 40.4
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.1e-06 56.6 95 31.6
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.1e-06 56.6 78 39.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-06 56.2 80 31.2
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.4e-06 56.2 87 31.0
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.4e-06 56.2 87 31.0
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-06 56.2 78 32.1
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.9e-06 55.8 79 36.7
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.9e-06 55.8 85 36.5
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 5.5e-06 54.3 50 48.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 9.4e-06 53.5 48 41.7
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 9.4e-06 53.5 48 41.7


User provided reference genes

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