Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 4.9e-102 374.4 181 100.0
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 2.2e-57 226.1 185 65.9
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 6.3e-57 224.6 184 64.1
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 5.2e-51 204.9 191 61.8
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 8.8e-51 204.1 184 59.8
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 9.8e-50 200.7 186 57.5
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 2.4e-48 196.1 188 62.2
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 7.0e-48 194.5 188 61.2
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 8.6e-38 161.0 176 52.3
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.0e-32 141.4 166 50.6
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 7.8e-31 137.9 161 47.8
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.7e-30 136.7 168 47.0
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.0e-26 123.2 179 45.8
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 7.5e-26 121.3 171 43.3
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 1.7e-25 120.2 175 44.6
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 4.9e-25 118.6 174 44.3
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 6.4e-25 118.2 176 42.0
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 8.3e-25 117.9 173 44.5
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 8.3e-25 117.9 148 45.9
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 3.2e-24 115.9 159 44.7
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.2e-24 115.9 178 42.1
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 1.2e-23 114.0 173 42.2
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.1e-23 113.2 173 42.8
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.7e-23 112.8 173 41.6
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.5e-23 112.5 177 46.3
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 7.8e-23 111.3 163 39.9
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 1.0e-22 110.9 161 42.2
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.3e-22 110.5 163 42.9
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 2.3e-22 109.8 181 40.3
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 2.3e-22 109.8 166 44.6
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-21 107.5 166 41.6
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-21 107.5 166 41.6
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.3e-21 105.9 170 40.6
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.3e-21 105.9 166 41.6
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 7.3e-21 104.8 165 42.4
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 2.1e-20 103.2 171 39.8
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.2e-20 101.7 171 40.4
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.8e-19 100.1 156 41.7
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 2.3e-19 99.8 170 40.0
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 2.3e-19 99.8 167 37.1
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 3.1e-19 99.4 165 37.6
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 5.2e-19 98.6 147 42.9
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.2e-18 97.4 174 41.4
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.4e-18 95.9 172 39.5
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 4.4e-18 95.5 183 36.1
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 5.8e-18 95.1 155 39.4
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 7.5e-18 94.7 151 41.1
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 9.9e-18 94.4 161 39.8
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 1.3e-17 94.0 166 39.8
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 1.7e-17 93.6 160 37.5
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.7e-17 92.4 169 40.2
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 3.7e-17 92.4 174 36.8
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-16 90.9 152 38.2
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.4e-16 90.5 160 36.2
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.9e-16 90.1 164 39.6
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.9e-16 90.1 152 39.5
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 2.4e-16 89.7 159 35.2
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 4.1e-16 89.0 157 38.2
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 5.4e-16 88.6 163 39.3
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 5.4e-16 88.6 163 38.0
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.1e-16 88.2 152 40.1
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.2e-15 87.4 125 43.2
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 1.2e-15 87.4 155 36.8
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 4.6e-15 85.5 168 37.5
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 4.6e-15 85.5 189 32.8
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 6.0e-15 85.1 171 35.1
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 6.0e-15 85.1 160 37.5
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.3e-14 84.0 108 45.4
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.3e-14 84.0 154 35.1
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 3.0e-14 82.8 151 39.1
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.0e-14 82.8 158 37.3
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 5.1e-14 82.0 152 38.8
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 6.6e-14 81.6 164 35.4
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.1e-13 80.9 109 41.3
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 2.5e-13 79.7 191 34.0
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 2.5e-13 79.7 155 34.8
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 3.3e-13 79.3 149 36.2
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.3e-13 79.0 162 34.6
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 5.6e-13 78.6 153 32.7
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 5.6e-13 78.6 159 34.0
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 9.6e-13 77.8 155 36.1
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 2.1e-12 76.6 150 36.7
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 2.1e-12 76.6 162 35.8
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 2.8e-12 76.3 159 35.8
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 6.2e-12 75.1 167 35.3
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 8.1e-12 74.7 150 37.3
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.1e-11 74.3 134 39.6
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 1.4e-11 73.9 153 36.6
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 2.4e-11 73.2 127 37.8
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 4.0e-11 72.4 166 33.7
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 5.2e-11 72.0 149 33.6
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 6.8e-11 71.6 167 35.9
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 2.0e-10 70.1 167 32.9
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 2.6e-10 69.7 105 41.0
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 3.4e-10 69.3 142 32.4
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 3.4e-10 69.3 174 31.0
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.4e-10 68.9 156 34.6
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 5.8e-10 68.6 146 33.6
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 5.8e-10 68.6 143 37.1
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.9e-10 67.8 164 29.3
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.7e-09 67.0 166 29.5
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 1.7e-09 67.0 156 33.3
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 1.7e-09 67.0 153 35.3
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 3.8e-09 65.9 160 31.9
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.9e-09 65.5 163 33.7
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 6.4e-09 65.1 148 35.1
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-08 64.3 154 29.9
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.4e-08 63.9 158 31.6
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 1.4e-08 63.9 150 36.0
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-08 63.9 165 29.7
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.9e-08 63.5 105 41.9
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 2.4e-08 63.2 95 38.9
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 2.4e-08 63.2 154 31.2
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 2.4e-08 63.2 162 29.6
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 3.2e-08 62.8 170 32.9
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 5.4e-08 62.0 176 29.5
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 7.1e-08 61.6 163 29.4
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 9.3e-08 61.2 155 31.6
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 9.3e-08 61.2 174 29.3
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 3.5e-07 59.3 165 33.3
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 4.6e-07 58.9 94 38.3
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.6e-07 58.9 145 33.1
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 7.8e-07 58.2 158 33.5
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.0e-06 57.8 148 30.4
Prupe.1G419200 Prunus persica HOM05D005317 ORTHO05D005146 2.3e-06 56.6 164 29.3
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 5.1e-06 55.5 189 29.6
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.1e-06 55.5 145 32.4
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 6.6e-06 55.1 177 32.8
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.6e-06 55.1 156 29.5
arahy.Tifrunner.gnm1.ann1.K9IMQL Arachis hypogaea HOM05D005317 ORTHO05D005146 8.7e-06 54.7 181 30.4
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 8.7e-06 54.7 161 30.4
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 8.7e-06 54.7 187 29.9


User provided reference genes

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