Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026673 Lotus japonicus HOM05D011457 ORTHO05D007788 0.0e+00 1241.9 680 100.0
Lj3g0011410 Lotus japonicus HOM05D011457 ORTHO05D007788 1.2e-140 504.6 286 87.8
Lj2g0006281 Lotus japonicus HOM05D011457 ORTHO05D007788 3.5e-140 503.1 286 87.1
Lj6g0005229 Lotus japonicus HOM05D011457 ORTHO05D007788 7.7e-140 501.9 286 87.4
Lj2g0010200 Lotus japonicus HOM05D011457 ORTHO05D007788 1.6e-105 387.9 254 90.6
Lj6g0007559 Lotus japonicus HOM05D011457 ORTHO05D007788 9.8e-103 378.6 281 82.2
Lj3g0008676 Lotus japonicus HOM05D011457 ORTHO05D007788 3.8e-78 297.0 276 67.8
Lj3g0019002 Lotus japonicus HOM05D011457 ORTHO05D007788 2.7e-52 211.1 184 76.1
Medtr4g007830 Medicago truncatula HOM05D011457 ORTHO05D007788 9.4e-45 186.0 218 41.7
Medtr5g022270 Medicago truncatula HOM05D009725 ORTHO05D007788 6.3e-33 146.7 265 34.7
Lj2g0027504 Lotus japonicus HOM05D009725 ORTHO05D007788 1.8e-32 145.2 285 32.3
Medtr2g022080 Medicago truncatula HOM05D009725 ORTHO05D007788 7.0e-32 143.3 299 32.4
Medtr8g089760 Medicago truncatula HOM05D011457 ORTHO05D007788 3.2e-29 134.4 157 39.5
arahy.Tifrunner.gnm1.ann1.4TSV6W Arachis hypogaea HOM05D008645 ORTHO05D007788 6.1e-28 130.2 260 31.9
arahy.Tifrunner.gnm1.ann1.AL9EYS Arachis hypogaea HOM05D008645 ORTHO05D007788 6.1e-28 130.2 260 31.9
arahy.Tifrunner.gnm1.ann1.AXL83M Arachis hypogaea HOM05D008645 ORTHO05D007788 6.1e-28 130.2 256 34.0
arahy.Tifrunner.gnm1.ann1.GI9T10 Arachis hypogaea HOM05D008645 ORTHO05D007788 6.1e-28 130.2 260 31.9
Medtr4g040020 Medicago truncatula HOM05D009725 ORTHO05D007788 1.0e-27 129.4 209 36.4
Lj3g0012453 Lotus japonicus HOM05D011457 ORTHO05D007788 3.9e-27 127.5 88 73.9
arahy.Tifrunner.gnm1.ann1.RA57MB Arachis hypogaea HOM05D008645 ORTHO05D007788 2.6e-26 124.8 253 31.2
Lj4g0022736 Lotus japonicus HOM05D000045 ORTHO05D007788 2.6e-26 124.8 265 30.9
Lj5g0014629 Lotus japonicus HOM05D011457 ORTHO05D007788 1.7e-25 122.1 229 30.1
arahy.Tifrunner.gnm1.ann1.GDDC9H Arachis hypogaea HOM05D008645 ORTHO05D007788 2.2e-25 121.7 273 30.4
arahy.Tifrunner.gnm1.ann1.D6JZRQ Arachis hypogaea HOM05D008645 ORTHO05D007788 9.1e-24 116.3 265 31.3
arahy.Tifrunner.gnm1.ann1.TC2NGU Arachis hypogaea HOM05D010837 ORTHO05D007788 1.2e-23 115.9 263 29.3
arahy.Tifrunner.gnm1.ann1.F2DF0X Arachis hypogaea HOM05D010837 ORTHO05D007788 1.9e-21 108.6 266 27.1
arahy.Tifrunner.gnm1.ann1.RSA1RP Arachis hypogaea HOM05D008645 ORTHO05D007788 3.2e-21 107.8 239 30.5
arahy.Tifrunner.gnm1.ann1.IRL4YX Arachis hypogaea HOM05D008645 ORTHO05D007788 4.2e-21 107.5 253 31.6
arahy.Tifrunner.gnm1.ann1.DG4Z6X Arachis hypogaea HOM05D008645 ORTHO05D007788 5.5e-21 107.1 220 30.5
arahy.Tifrunner.gnm1.ann1.8LA92R Arachis hypogaea HOM05D010837 ORTHO05D007788 1.6e-20 105.5 146 38.4
Medtr6g035170 Medicago truncatula HOM05D009725 ORTHO05D007788 1.0e-19 102.8 171 32.7
Lj5g0015857 Lotus japonicus HOM05D009725 ORTHO05D007788 1.2e-18 99.4 192 32.3
arahy.Tifrunner.gnm1.ann1.YV18TB Arachis hypogaea HOM05D008645 ORTHO05D007788 2.0e-18 98.6 197 31.5
arahy.Tifrunner.gnm1.ann1.E65I8K Arachis hypogaea HOM05D010837 ORTHO05D007788 5.7e-18 97.1 228 30.7
arahy.Tifrunner.gnm1.ann1.N9YQYJ Arachis hypogaea HOM05D008645 ORTHO05D007788 9.7e-18 96.3 152 36.2
Medtr1g009820 Medicago truncatula HOM05D011457 ORTHO05D007788 1.7e-17 95.5 99 39.4
arahy.Tifrunner.gnm1.ann1.6XKL96 Arachis hypogaea HOM05D008645 ORTHO05D007788 2.8e-17 94.7 234 27.4
arahy.Tifrunner.gnm1.ann1.Q3QHXW Arachis hypogaea HOM05D008645 ORTHO05D007788 4.8e-17 94.0 280 29.3
arahy.Tifrunner.gnm1.ann1.NUK2FL Arachis hypogaea HOM05D010837 ORTHO05D007788 6.3e-17 93.6 263 27.4
QL10p051876 Quercus lobata HOM05D022192 ORTHO05D009908 1.1e-16 92.8 266 27.4
arahy.Tifrunner.gnm1.ann1.PLL5KT Arachis hypogaea HOM05D008645 ORTHO05D007788 1.8e-16 92.0 208 28.8
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 9.1e-16 89.7 232 31.5
arahy.Tifrunner.gnm1.ann1.T0JM81 Arachis hypogaea HOM05D008645 ORTHO05D007788 2.0e-15 88.6 209 31.1
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 3.5e-15 87.8 306 27.1
TPR.G37504 Trifolium pratense HOM05D009725 ORTHO05D007788 5.9e-15 87.0 139 31.7
arahy.Tifrunner.gnm1.ann1.A7DQCV Arachis hypogaea HOM05D011457 ORTHO05D007788 1.3e-14 85.9 272 25.7
Lj1g0008845 Lotus japonicus HOM05D002252 ORTHO05D002451 1.3e-14 85.9 295 25.8
Lj4g0000724 Lotus japonicus HOM05D002252 ORTHO05D002451 1.3e-14 85.9 295 25.8
QL08p032772 Quercus lobata HOM05D022192 ORTHO05D009908 1.3e-14 85.9 235 26.0
TPR.G14680 Trifolium pratense HOM05D011457 ORTHO05D007788 2.9e-14 84.7 69 49.3
arahy.Tifrunner.gnm1.ann1.1I2ZQ8 Arachis hypogaea HOM05D008645 ORTHO05D007788 5.0e-14 84.0 234 27.8
arahy.Tifrunner.gnm1.ann1.EFNC7X Arachis hypogaea HOM05D008645 ORTHO05D007788 5.0e-14 84.0 239 28.0
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 5.0e-14 84.0 272 28.7
FAN16G0074 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.1e-13 82.8 252 25.0
arahy.Tifrunner.gnm1.ann1.Y9CTG1 Arachis hypogaea HOM05D008645 ORTHO05D007788 1.9e-13 82.0 261 24.9
arahy.Tifrunner.gnm1.ann1.2N7Z0C Arachis hypogaea HOM05D008645 ORTHO05D007788 2.5e-13 81.6 261 28.0
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 2.5e-13 81.6 266 25.6
arahy.Tifrunner.gnm1.ann1.IZD333 Arachis hypogaea HOM05D008645 ORTHO05D007788 3.2e-13 81.3 293 27.0
Lj3g0016118 Lotus japonicus HOM05D007728 ORTHO05D009681 5.5e-13 80.5 260 23.5
arahy.Tifrunner.gnm1.ann1.9N7IR1 Arachis hypogaea HOM05D022818 ORTHO05D007788 7.2e-13 80.1 266 25.2
Lj6g0010635 Lotus japonicus HOM05D007728 ORTHO05D009681 9.4e-13 79.7 290 22.4
Lj4g0000914 Lotus japonicus HOM05D007728 ORTHO05D009681 1.6e-12 79.0 290 22.8
Lj6g0011981 Lotus japonicus HOM05D007728 ORTHO05D009681 1.6e-12 79.0 255 22.0
FAN03G2350 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.7e-12 78.2 244 24.2
Medtr8g031230 Medicago truncatula HOM05D009725 ORTHO05D007788 2.7e-12 78.2 190 27.9
Rhsim01G0207900 Rhododendron simsii HOM05D012118 ORTHO05D009908 2.7e-12 78.2 255 24.7
Rhsim04G0161400 Rhododendron simsii HOM05D012118 ORTHO05D009908 4.7e-12 77.4 235 23.8
Lj1g0001785 Lotus japonicus HOM05D000045 ORTHO05D007788 8.0e-12 76.6 265 24.5
arahy.Tifrunner.gnm1.ann1.K8WX4Q Arachis hypogaea HOM05D014551 ORTHO05D009681 1.0e-11 76.3 265 25.3
arahy.Tifrunner.gnm1.ann1.CYJA9T Arachis hypogaea HOM05D007728 ORTHO05D009681 1.8e-11 75.5 250 24.4
Lj4g0017512 Lotus japonicus HOM05D007728 ORTHO05D009681 1.8e-11 75.5 290 22.1
Lj1g0027806 Lotus japonicus HOM05D007728 ORTHO05D009681 3.0e-11 74.7 274 20.8
Lj3g0005611 Lotus japonicus HOM05D007728 ORTHO05D009681 3.0e-11 74.7 290 21.7
TPR.G10800 Trifolium pratense HOM05D009725 ORTHO05D007788 4.0e-11 74.3 99 35.4
Thecc.04G055800 Theobroma cacao HOM05D008451 ORTHO05D009908 8.8e-11 73.2 151 31.1
TPR.G30128 Trifolium pratense HOM05D009725 ORTHO05D007788 8.8e-11 73.2 103 35.0
arahy.Tifrunner.gnm1.ann1.L8MZRF Arachis hypogaea HOM05D010837 ORTHO05D007788 1.2e-10 72.8 93 37.6
arahy.Tifrunner.gnm1.ann1.29P2VL Arachis hypogaea HOM05D010837 ORTHO05D007788 1.5e-10 72.4 94 38.3
FAN27G2741 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.5e-10 72.4 279 22.9
Lj6g0022050 Lotus japonicus HOM05D007728 ORTHO05D009681 1.5e-10 72.4 285 22.8
arahy.Tifrunner.gnm1.ann1.928VU4 Arachis hypogaea HOM05D010837 ORTHO05D007788 2.0e-10 72.0 94 38.3
arahy.Tifrunner.gnm1.ann1.BHD3CD Arachis hypogaea HOM05D010837 ORTHO05D007788 2.0e-10 72.0 94 38.3
arahy.Tifrunner.gnm1.ann1.U5M6WA Arachis hypogaea HOM05D000476 ORTHO05D007788 2.6e-10 71.6 89 38.2
arahy.Tifrunner.gnm1.ann1.P41VJW Arachis hypogaea HOM05D008645 ORTHO05D007788 3.4e-10 71.2 197 28.9
QL09p039396 Quercus lobata HOM05D022192 ORTHO05D009908 3.4e-10 71.2 154 29.2
arahy.Tifrunner.gnm1.ann1.26YFK1 Arachis hypogaea HOM05D007728 ORTHO05D021507 4.4e-10 70.9 218 27.1
arahy.Tifrunner.gnm1.ann1.FLR77E Arachis hypogaea HOM05D007728 ORTHO05D021507 4.4e-10 70.9 218 27.1
arahy.Tifrunner.gnm1.ann1.V9IAB3 Arachis hypogaea HOM05D010837 ORTHO05D007788 4.4e-10 70.9 82 41.5
Medtr6g471840 Medicago truncatula HOM05D007728 ORTHO05D009681 5.7e-10 70.5 260 21.5
arahy.Tifrunner.gnm1.ann1.1VF0IH Arachis hypogaea HOM05D010837 ORTHO05D007788 9.8e-10 69.7 84 40.5
arahy.Tifrunner.gnm1.ann1.D9VETH Arachis hypogaea HOM05D008607 ORTHO05D010784 1.7e-09 68.9 266 23.3
arahy.Tifrunner.gnm1.ann1.WWA99J Arachis hypogaea HOM05D008607 ORTHO05D010784 1.7e-09 68.9 266 23.3
FAN17G1842 Fragaria x ananassa HOM05D008674 ORTHO05D000898 2.2e-09 68.6 260 24.2
FAN28G1618 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.2e-09 68.6 278 21.9
arahy.Tifrunner.gnm1.ann1.MRZ5LS Arachis hypogaea HOM05D007728 ORTHO05D009681 2.8e-09 68.2 177 23.7
arahy.Tifrunner.gnm1.ann1.UYMN7S Arachis hypogaea HOM05D008607 ORTHO05D010784 2.8e-09 68.2 266 23.3
LjContig00357g0010761 Lotus japonicus HOM05D007728 ORTHO05D009681 2.8e-09 68.2 277 22.4
arahy.Tifrunner.gnm1.ann1.C31QLU Arachis hypogaea HOM05D010837 ORTHO05D007788 3.7e-09 67.8 82 39.0
arahy.Tifrunner.gnm1.ann1.NMLT85 Arachis hypogaea HOM05D007728 ORTHO05D021507 3.7e-09 67.8 218 26.1
arahy.Tifrunner.gnm1.ann1.WW3PD2 Arachis hypogaea HOM05D010837 ORTHO05D007788 3.7e-09 67.8 254 24.4
FAN28G2991 Fragaria x ananassa HOM05D008674 ORTHO05D000898 6.3e-09 67.0 260 24.2
Lj6A677T76 Lonicera japonica HOM05D002639 ORTHO05D003094 6.3e-09 67.0 197 28.9
HPP92_000409 Vanilla planifolia HOM05D002639 ORTHO05D003094 6.3e-09 67.0 165 29.7
FAN15G3472 Fragaria x ananassa HOM05D008674 ORTHO05D012371 8.3e-09 66.6 259 23.6
Medtr8g031240 Medicago truncatula HOM05D009725 ORTHO05D007788 8.3e-09 66.6 149 27.5
FAN10G0819 Fragaria x ananassa HOM05D008674 ORTHO05D000898 1.1e-08 66.2 260 23.8
Lsat_1_v5_gn_5_62580 Lactuca sativa HOM05D002639 ORTHO05D003094 1.1e-08 66.2 199 29.6
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 1.1e-08 66.2 259 23.2
TPR.G22561 Trifolium pratense HOM05D000045 ORTHO05D007788 1.1e-08 66.2 152 25.0
Lj5g0007568 Lotus japonicus HOM05D007728 ORTHO05D009681 2.4e-08 65.1 170 27.1
Medtr8g467430 Medicago truncatula HOM05D009725 ORTHO05D007788 3.1e-08 64.7 126 31.7
COL.COLO4_07542 Corchorus olitorius HOM05D030435 ORTHO05D013856 4.1e-08 64.3 146 28.1
Lj3g0004344 Lotus japonicus HOM05D007728 ORTHO05D009681 4.1e-08 64.3 154 27.3
Lj4g0019282 Lotus japonicus HOM05D007728 ORTHO05D009681 4.1e-08 64.3 171 21.6
arahy.Tifrunner.gnm1.ann1.9R8PUV Arachis hypogaea HOM05D008607 ORTHO05D010784 5.4e-08 63.9 266 22.9
Lj4g0000181 Lotus japonicus HOM05D007728 ORTHO05D009681 7.0e-08 63.5 216 25.5
Lj4g0001150 Lotus japonicus HOM05D007728 ORTHO05D009681 7.0e-08 63.5 216 25.5
Lj4g0023843 Lotus japonicus HOM05D007728 ORTHO05D009681 7.0e-08 63.5 216 25.5
CSS0025382 Camellia sinensis var. sinensis HOM05D012118 ORTHO05D009908 9.1e-08 63.2 94 34.0
HPP92_013719 Vanilla planifolia HOM05D002639 ORTHO05D003094 9.1e-08 63.2 201 27.4
arahy.Tifrunner.gnm1.ann1.8HM2EW Arachis hypogaea HOM05D008607 ORTHO05D010784 1.6e-07 62.4 220 24.1
arahy.Tifrunner.gnm1.ann1.WZZH7X Arachis hypogaea HOM05D008607 ORTHO05D010784 1.6e-07 62.4 220 24.1
Peaxi162Scf00498g00738 Petunia axillaris HOM05D002639 ORTHO05D003094 2.0e-07 62.0 192 27.1
TPR.G2699 Trifolium pratense HOM05D000045 ORTHO05D000067 2.0e-07 62.0 177 23.2
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 2.7e-07 61.6 49 53.1
Lj4g0022567 Lotus japonicus HOM05D007728 ORTHO05D009681 2.7e-07 61.6 183 27.3
ATR0796G180 Amborella trichopoda HOM05D002639 ORTHO05D003094 3.5e-07 61.2 190 28.4
Lj1g0027147 Lotus japonicus HOM05D007728 ORTHO05D009681 3.5e-07 61.2 277 22.0
Lj4g0006777 Lotus japonicus HOM05D007728 ORTHO05D009681 3.5e-07 61.2 272 20.6
FAN04G1460 Fragaria x ananassa HOM05D007993 ORTHO05D000898 7.7e-07 60.1 285 21.8
DCAR_023286 Daucus carota HOM05D002639 ORTHO05D003094 1.0e-06 59.7 200 27.0
Rhsim03G0056000 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.0e-06 59.7 132 25.0
arahy.Tifrunner.gnm1.ann1.CQ2DU1 Arachis hypogaea HOM05D008607 ORTHO05D010784 1.3e-06 59.3 149 25.5
FAN08G1761 Fragaria x ananassa HOM05D008674 ORTHO05D012371 1.3e-06 59.3 216 24.5
arahy.Tifrunner.gnm1.ann1.IPN40Q Arachis hypogaea HOM05D008607 ORTHO05D010784 1.7e-06 58.9 148 25.7
Lj1g0007911 Lotus japonicus HOM05D007728 ORTHO05D009681 1.7e-06 58.9 224 19.6
Lj4g0007695 Lotus japonicus HOM05D007728 ORTHO05D009681 1.7e-06 58.9 154 25.3
Medtr1g070355 Medicago truncatula HOM05D000045 ORTHO05D007522 1.7e-06 58.9 131 28.2
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 1.7e-06 58.9 238 24.4
QL06p009035 Quercus lobata HOM05D002639 ORTHO05D003094 1.7e-06 58.9 182 28.6
Sc13g0003440 Simmondsia chinensis HOM05D002639 ORTHO05D003094 1.7e-06 58.9 233 26.2
Lj3g0019926 Lotus japonicus HOM05D007728 ORTHO05D009681 2.3e-06 58.5 269 20.8
Haze_01193 Corylus avellana HOM05D002639 ORTHO05D003094 2.9e-06 58.2 182 28.6
Lj5g0000777 Lotus japonicus HOM05D024850 ORTHO05D025768 3.8e-06 57.8 154 26.0
Zm00001eb111330 Zea mays HOM05D002639 ORTHO05D003094 3.8e-06 57.8 196 27.0
Lj1g0017368 Lotus japonicus HOM05D000045 ORTHO05D007788 5.0e-06 57.4 98 35.7
Lj4g0015611 Lotus japonicus HOM05D007728 ORTHO05D009681 5.0e-06 57.4 149 25.5
GSVIVG01017729001 Vitis vinifera HOM05D002639 ORTHO05D003094 5.0e-06 57.4 187 27.3
Hma1.2p1_1185F.1_g265060 Hydrangea macrophylla HOM05D002639 ORTHO05D003094 6.6e-06 57.0 193 28.0
Nitab4.5_0000570g0140 Nicotiana tabacum HOM05D002639 ORTHO05D003094 6.6e-06 57.0 182 28.0
SEGI_08688 Sequoiadendron giganteum HOM05D002639 ORTHO05D003094 6.6e-06 57.0 199 26.6
GSVIVG01010705001 Vitis vinifera HOM05D008451 ORTHO05D009908 8.6e-06 56.6 158 26.6


User provided reference genes

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