Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026171 Lotus japonicus HOM05D008067 ORTHO05D010226 2.6e-30 135.2 94 100.0
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 5.5e-12 74.3 52 75.0
TPR.G23486 Trifolium pratense HOM05D008067 ORTHO05D010226 9.4e-12 73.6 64 65.6
Medtr6g086485 Medicago truncatula HOM05D008067 ORTHO05D010226 1.6e-11 72.8 59 64.4
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 2.7e-11 72.0 53 67.9
TPR.G21702 Trifolium pratense HOM05D008067 ORTHO05D010226 2.7e-11 72.0 65 66.2
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 7.9e-11 70.5 55 60.0
Psat7g013560 Pisum sativum HOM05D008067 ORTHO05D010226 1.0e-10 70.1 65 64.6
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 1.8e-10 69.3 53 66.0
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 1.8e-10 69.3 53 66.0
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 3.0e-10 68.6 57 63.2
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 3.9e-10 68.2 58 60.3
Glyma.08G039000 Glycine max HOM05D008067 ORTHO05D010226 3.9e-10 68.2 64 60.9
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 5.1e-10 67.8 54 64.8
Lalb_Chr05g0222841 Lupinus albus HOM05D008067 ORTHO05D010226 8.8e-10 67.0 61 62.3
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 8.8e-10 67.0 56 66.1
TPR.G35272 Trifolium pratense HOM05D003111 ORTHO05D003502 1.1e-09 66.6 64 56.2
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 1.5e-09 66.2 64 60.9
CiPaw.04G164800 Carya illinoinensis HOM05D008067 ORTHO05D010226 4.3e-09 64.7 53 62.3
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 4.3e-09 64.7 48 66.7
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 5.7e-09 64.3 55 58.2
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 5.7e-09 64.3 53 62.3
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 7.4e-09 63.9 55 58.2
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 7.4e-09 63.9 55 58.2
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 7.4e-09 63.9 47 63.8
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 7.4e-09 63.9 55 56.4
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 9.7e-09 63.5 52 61.5
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 9.7e-09 63.5 54 63.0
Lj2g0013738 Lotus japonicus HOM05D008067 ORTHO05D010226 2.8e-08 62.0 52 59.6
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 2.8e-08 62.0 54 61.1
Phvul.004G162800 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 4.8e-08 61.2 59 62.7
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 6.3e-08 60.8 45 64.4
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 6.3e-08 60.8 45 64.4
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 6.3e-08 60.8 53 60.4
CiPaw.03G232800 Carya illinoinensis HOM05D008067 ORTHO05D010226 8.2e-08 60.5 49 67.3
Lj2g0022306 Lotus japonicus HOM05D008067 ORTHO05D010226 8.2e-08 60.5 52 59.6
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 1.1e-07 60.1 56 55.4
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 1.4e-07 59.7 51 58.8
Psat1g041240 Pisum sativum HOM05D008067 ORTHO05D010226 1.4e-07 59.7 52 57.7
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 1.8e-07 59.3 53 60.4
Lj2g0025160 Lotus japonicus HOM05D008067 ORTHO05D010226 1.8e-07 59.3 52 57.7
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 3.1e-07 58.5 55 52.7
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 3.1e-07 58.5 61 55.7
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 5.3e-07 57.8 50 60.0
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 6.9e-07 57.4 51 56.9
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 9.1e-07 57.0 50 58.0
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 9.1e-07 57.0 51 56.9
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 9.1e-07 57.0 55 50.9
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 9.1e-07 57.0 55 50.9
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 9.1e-07 57.0 60 53.3
TAR636G2707 Trochodendron aralioides HOM05D003111 ORTHO05D003502 9.1e-07 57.0 52 57.7
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 1.5e-06 56.2 46 65.2
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 2.0e-06 55.8 44 59.1
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 3.4e-06 55.1 46 63.0
Peaxi162Scf00546g00115 Petunia axillaris HOM05D008067 ORTHO05D010226 4.5e-06 54.7 54 55.6
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 4.5e-06 54.7 52 48.1
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 4.5e-06 54.7 52 48.1
Atru.chr7.1341 Acer truncatum HOM05D008067 ORTHO05D010226 7.7e-06 53.9 55 45.5
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 7.7e-06 53.9 66 45.5


User provided reference genes

Program Settings