Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 4.0e-204 714.5 360 100.0
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 9.9e-203 709.9 360 99.4
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 5.6e-174 614.4 361 86.4
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 8.1e-173 610.5 353 85.8
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.5e-171 606.3 360 84.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 7.6e-171 604.0 363 85.4
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 1.0e-170 603.6 362 84.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.1e-169 600.1 355 85.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.1e-166 590.1 360 82.2
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 4.8e-165 584.7 355 84.2
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.5e-158 563.1 361 78.4
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 3.7e-157 558.5 361 75.1
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 4.1e-156 555.1 356 76.1
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.2e-155 553.5 361 75.1
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.8e-151 539.7 361 73.7
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 7.4e-150 534.3 355 74.1
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 9.7e-150 533.9 356 75.0
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.8e-149 532.3 361 73.7
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.1e-148 530.4 358 73.2
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 2.6e-147 525.8 358 72.9
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 3.4e-147 525.4 356 73.3
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 5.9e-147 524.6 350 77.7
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 5.9e-147 524.6 356 73.9
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 7.7e-147 524.2 356 73.6
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 7.7e-147 524.2 361 72.9
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 5.0e-146 521.5 390 68.2
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 8.5e-146 520.8 356 72.8
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 2.5e-145 519.2 357 73.1
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 5.5e-145 518.1 356 73.3
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 9.4e-145 517.3 356 72.2
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 9.4e-145 517.3 356 71.9
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.2e-144 516.9 359 74.1
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.2e-144 516.9 359 74.1
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.2e-144 516.9 356 71.9
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 2.1e-144 516.2 359 74.1
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 6.1e-144 514.6 356 72.2
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 7.9e-144 514.2 358 74.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 2.3e-143 512.7 356 69.9
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 3.9e-143 511.9 356 70.5
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.1e-142 510.4 356 70.2
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 1.5e-142 510.0 360 72.2
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 5.7e-142 508.1 359 73.8
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.3e-141 506.9 356 71.1
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 1.7e-141 506.5 362 69.9
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.7e-141 506.5 360 70.0
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.2e-141 506.1 356 71.1
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 2.8e-141 505.8 361 70.4
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 2.8e-141 505.8 359 69.4
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 3.7e-141 505.4 356 70.5
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 6.3e-141 504.6 360 69.4
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.8e-140 503.1 359 69.6
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.8e-140 503.1 361 69.3
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 3.1e-140 502.3 356 69.9
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 4.1e-140 501.9 356 70.5
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 9.1e-140 500.7 361 69.5
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.2e-139 500.4 357 69.7
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.7e-138 496.5 361 69.0
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.0e-138 495.0 359 70.2
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 3.2e-137 492.3 356 69.9
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 3.2e-137 492.3 361 67.9
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 4.7e-136 488.4 356 69.4
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 8.0e-136 487.6 356 69.4
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 2.3e-135 486.1 356 69.1
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 6.7e-135 484.6 356 69.1
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 7.4e-134 481.1 356 68.5
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.8e-133 479.2 360 67.5
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 3.7e-133 478.8 356 68.3
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 4.8e-133 478.4 392 63.0
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 8.2e-133 477.6 361 67.6
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 7.0e-132 474.6 313 75.7
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.2e-131 473.8 358 67.0
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 2.0e-131 473.0 356 66.9
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.0e-131 473.0 358 67.6
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 5.9e-131 471.5 360 66.1
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 2.2e-130 469.5 357 65.8
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.9e-129 466.5 358 65.9
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 6.1e-128 461.5 358 67.0
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 7.5e-126 454.5 356 63.5
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.7e-125 452.2 356 65.4
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 4.8e-125 451.8 359 65.7
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 2.2e-122 443.0 478 54.0
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.9e-122 442.6 360 60.6
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 2.5e-121 439.5 359 63.2
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.3e-119 433.0 360 63.3
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.7e-117 426.8 360 60.3
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 5.5e-113 411.8 374 59.1
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.8e-112 409.5 378 58.2
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 2.2e-109 399.8 360 59.2
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.2e-107 394.0 353 56.1
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.4e-100 368.6 257 70.4
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.0e-99 366.7 258 71.7
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 3.9e-98 362.5 360 56.7
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 3.3e-97 359.4 252 69.4
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 3.1e-95 352.8 250 70.8
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.0e-95 352.4 349 49.9
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 9.2e-92 341.3 299 61.2
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.6e-88 329.3 379 46.4
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 7.6e-86 321.6 360 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.7e-85 320.5 360 46.9
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.1e-81 307.8 360 48.9
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.5e-81 306.6 360 49.4
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 6.2e-80 302.0 343 46.6
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.7e-77 293.9 201 74.1
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.4e-76 290.0 353 45.9
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 4.8e-72 275.8 201 66.2
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 5.4e-68 262.3 346 40.2
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 5.1e-66 255.8 352 42.3
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.6e-64 250.8 361 39.6
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 3.9e-50 203.0 213 54.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.4e-47 194.5 152 65.8
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.6e-46 190.3 148 64.9
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 3.9e-42 176.4 152 64.5
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 3.8e-37 159.8 183 49.7
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.4e-34 151.4 397 29.5
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 4.3e-33 146.4 134 61.9
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.7e-32 144.4 97 75.3
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 4.8e-32 142.9 100 74.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.8e-31 141.0 359 29.8
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.3e-31 139.4 102 63.7
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.0e-29 135.2 98 68.4
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-27 128.3 115 61.7
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 4.7e-27 126.3 89 68.5
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 8.8e-26 122.1 128 52.3
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 8.2e-24 115.5 92 63.0
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.9e-20 104.4 87 63.2
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 5.5e-20 102.8 87 62.1
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 6.1e-19 99.4 105 50.5
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 6.1e-19 99.4 105 50.5
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.8e-15 87.8 96 53.1
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 3.8e-13 80.1 81 54.3
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 6.5e-13 79.3 51 70.6


User provided reference genes

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