Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 0.0e+00 1339.3 695 100.0
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 3.1e-285 984.9 716 71.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 2.6e-284 981.9 726 71.6
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 8.7e-272 940.3 724 69.1
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 3.3e-271 938.3 713 69.4
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 4.8e-270 934.5 724 70.2
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 3.1e-269 931.8 707 69.6
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 2.6e-268 928.7 713 70.4
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.9e-266 922.5 727 68.4
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 4.6e-265 917.9 762 66.0
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.3e-263 911.4 717 68.5
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.5e-242 842.4 728 61.8
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.0e-235 820.5 642 69.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 2.1e-233 812.8 722 60.0
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.5e-231 806.6 742 58.9
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.2e-230 802.7 726 59.6
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.3e-230 801.2 727 59.8
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.8e-229 799.7 726 59.1
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.3e-227 793.5 716 59.2
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 8.5e-227 790.8 713 60.6
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 7.9e-225 784.3 716 57.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 2.3e-224 782.7 717 59.1
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 7.4e-223 777.7 717 57.9
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 9.7e-223 777.3 713 60.3
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 2.2e-222 776.2 742 58.0
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.0e-219 767.3 717 57.3
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.3e-219 766.9 710 58.7
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.9e-219 765.8 717 57.7
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.8e-219 765.4 717 57.2
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.5e-218 763.5 726 57.6
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 2.7e-217 759.2 728 57.4
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 2.3e-216 756.1 711 57.5
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.0e-216 755.4 711 56.8
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.7e-214 750.0 731 56.4
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.9e-211 739.2 711 55.6
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.1e-210 737.3 729 55.1
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 3.2e-210 735.7 709 57.1
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.2e-209 733.8 728 55.2
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.6e-209 732.3 724 55.8
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.0e-208 729.2 728 54.9
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 6.8e-208 728.0 730 54.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.3e-206 723.8 728 55.1
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 5.4e-205 718.4 725 55.7
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 7.0e-205 718.0 723 55.3
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 1.6e-204 716.8 730 53.0
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 2.7e-204 716.1 715 55.4
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 5.9e-204 714.9 750 53.9
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 3.8e-203 712.2 732 53.3
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 6.5e-203 711.4 733 52.0
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 7.2e-202 708.0 727 53.9
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 3.6e-201 705.7 733 54.0
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.0e-200 704.1 716 55.0
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 2.6e-199 699.5 741 51.8
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 4.9e-198 695.3 709 53.6
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 2.7e-196 689.5 705 52.3
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 4.5e-196 688.7 728 53.8
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.8e-193 679.5 711 51.9
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.0e-192 677.6 648 58.0
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.8e-192 676.8 706 52.5
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 2.0e-191 673.3 704 52.0
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 3.7e-190 669.1 620 57.7
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 5.4e-189 665.2 726 50.4
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.2e-188 664.1 703 50.8
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.6e-188 663.7 750 49.7
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 8.6e-187 657.9 744 50.5
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.3e-186 656.0 713 51.2
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.2e-185 654.1 696 51.7
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 4.7e-185 652.1 719 51.0
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.8e-184 650.2 733 50.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.1e-184 649.4 726 52.2
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 4.0e-184 649.0 736 49.7
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 8.9e-184 647.9 766 48.6
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-183 647.5 726 51.1
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 2.0e-183 646.7 724 51.0
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 4.4e-183 645.6 715 51.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 7.5e-183 644.8 728 50.5
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 1.7e-182 643.7 722 50.6
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.7e-182 643.7 726 51.1
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.2e-182 643.3 711 51.1
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 3.7e-182 642.5 720 51.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 4.9e-182 642.1 692 50.1
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 2.4e-181 639.8 709 51.3
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 3.2e-181 639.4 632 55.5
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.0e-180 636.7 671 51.6
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.7e-180 636.3 727 50.5
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.7e-180 636.3 726 50.7
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 3.5e-180 636.0 720 50.7
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.6e-180 635.6 737 49.7
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 6.6e-179 631.7 737 49.5
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.2e-177 627.5 699 48.5
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 1.8e-176 623.6 716 48.6
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.8e-175 618.6 711 49.1
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.2e-172 610.9 739 48.2
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 4.6e-172 609.0 723 48.4
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.9e-171 605.9 713 49.6
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 6.6e-171 605.1 724 47.9
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 5.6e-170 602.1 722 48.1
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 2.3e-168 596.7 701 47.4
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 2.3e-168 596.7 667 48.0
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 1.5e-167 594.0 624 52.6
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.3e-166 590.9 716 49.7
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.7e-166 590.5 722 46.8
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.6e-164 583.9 731 48.8
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.8e-161 573.2 682 48.4
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.1e-157 561.2 627 51.2
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.9e-157 560.5 629 49.0
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 3.3e-154 549.7 605 51.9
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 3.3e-154 549.7 693 45.7
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.1e-153 547.0 529 57.8
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.6e-153 546.2 700 44.3
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 4.2e-149 532.7 800 42.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 4.0e-144 516.2 501 55.5
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 3.7e-137 493.0 651 43.9
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 5.3e-136 489.2 773 39.2
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.2e-134 483.8 683 44.1
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 8.2e-121 438.7 815 35.8
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.7e-119 432.2 768 38.2
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.4e-115 421.4 726 38.8
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.7e-113 414.5 752 37.2
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.8e-112 411.0 704 38.1
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.4e-88 331.6 667 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 3.8e-86 323.6 496 39.1
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.5e-85 321.6 503 39.6
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 8.9e-75 285.8 221 67.9
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 7.5e-66 256.1 479 33.8
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.7e-65 253.8 672 30.2
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.9e-57 226.9 434 35.3
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 8.1e-44 183.0 225 43.1
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.1e-39 168.3 127 65.4
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 8.7e-38 162.9 220 45.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.1e-35 154.5 96 69.8
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.6e-34 149.8 143 51.7
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.1e-32 146.0 324 31.5
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.2e-31 142.5 173 49.1
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.0e-30 139.4 98 68.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.4e-27 128.3 95 60.0
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.9e-25 120.6 151 48.3
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 6.4e-25 120.2 128 46.1
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 7.4e-21 106.7 94 63.8
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.6e-15 89.0 73 58.9
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.3e-14 85.9 246 30.9
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 2.6e-10 71.6 125 36.0
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 5.0e-09 67.4 491 22.0
GSVIVG01020605001 Vitis vinifera HOM05D001439 ORTHO05D002726 3.6e-07 61.2 277 27.1
Glyma.13G175200 Glycine max HOM05D001439 ORTHO05D002726 3.0e-06 58.2 109 38.5
MSTRG.21070 Avicennia marina HOM05D001312 ORTHO05D001832 5.1e-06 57.4 160 30.0
arahy.Tifrunner.gnm1.ann1.P48F6M Arachis hypogaea HOM05D001439 ORTHO05D002726 6.7e-06 57.0 131 33.6
Lalb_Chr20g0121581 Lupinus albus HOM05D001439 ORTHO05D002726 8.7e-06 56.6 157 30.6


User provided reference genes

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