Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 8.8e-215 750.0 368 100.0
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 3.4e-150 535.4 341 77.4
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 4.4e-150 535.0 368 72.3
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 8.4e-149 530.8 373 71.6
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 4.0e-143 511.9 368 71.5
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 1.8e-138 496.5 352 71.0
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 1.9e-137 493.0 355 70.7
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.9e-137 493.0 367 70.3
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 1.4e-135 486.9 372 68.3
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 1.4e-132 476.9 365 69.0
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 1.2e-131 473.8 365 68.8
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 5.6e-129 464.9 371 68.2
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 4.8e-128 461.8 367 68.4
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 5.5e-124 448.4 342 69.3
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 8.2e-120 434.5 338 65.1
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 5.9e-118 428.3 337 64.4
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.0e-114 417.5 338 62.7
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.8e-114 416.8 338 62.7
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.2e-110 404.1 338 65.4
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 6.3e-104 381.7 246 76.8
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 6.3e-104 381.7 337 60.8
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.8e-103 380.2 343 59.5
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 2.4e-103 379.8 286 68.5
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.3e-101 374.0 203 86.7
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.3e-101 374.0 203 84.7
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.3e-101 374.0 203 84.7
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.7e-101 373.6 203 84.2
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 2.2e-101 373.2 212 81.6
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 6.5e-101 371.7 234 78.2
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 8.5e-101 371.3 301 65.8
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.1e-100 370.9 320 62.8
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.4e-100 370.5 290 66.9
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 3.2e-100 369.4 203 84.2
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 3.2e-100 369.4 288 67.0
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 4.2e-100 369.0 201 84.6
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 4.2e-100 369.0 212 84.0
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 5.5e-100 368.6 233 74.7
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 5.5e-100 368.6 260 70.4
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 9.4e-100 367.9 262 70.2
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 3.6e-99 365.9 298 64.1
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 3.6e-99 365.9 236 72.9
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 4.7e-99 365.5 228 76.3
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 6.1e-99 365.2 218 79.8
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 3.0e-98 362.8 208 80.3
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 6.7e-98 361.7 203 82.8
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 1.1e-97 360.9 245 73.5
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 2.0e-97 360.1 209 80.9
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 2.0e-97 360.1 310 62.3
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 2.6e-97 359.8 207 82.1
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 3.3e-97 359.4 200 82.5
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 3.3e-97 359.4 207 81.6
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 4.4e-97 359.0 248 73.0
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 5.7e-97 358.6 221 78.3
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 7.4e-97 358.2 244 72.1
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 7.4e-97 358.2 244 72.1
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.7e-97 357.8 244 72.1
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 9.7e-97 357.8 203 80.3
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.7e-96 357.1 244 72.1
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 1.7e-96 357.1 201 81.6
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 1.7e-96 357.1 232 73.3
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.8e-96 356.3 353 56.7
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 4.8e-96 355.5 246 71.1
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 6.3e-96 355.1 203 79.8
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 5.3e-95 352.1 201 80.6
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 5.3e-95 352.1 247 70.4
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.0e-95 351.7 210 78.1
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.6e-94 350.5 210 77.1
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.6e-94 350.5 210 77.1
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.0e-94 350.1 203 79.8
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 2.0e-94 350.1 209 77.0
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 2.6e-94 349.7 209 76.6
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 2.6e-94 349.7 209 76.6
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 2.6e-94 349.7 203 80.3
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 3.5e-94 349.4 239 71.1
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 3.5e-94 349.4 209 76.1
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 3.5e-94 349.4 209 76.1
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 4.5e-94 349.0 200 82.0
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 5.9e-94 348.6 210 77.6
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 1.0e-93 347.8 253 68.8
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.0e-93 347.8 223 74.4
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.3e-93 347.4 211 77.7
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 1.3e-93 347.4 293 63.8
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 1.7e-93 347.1 252 68.3
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 1.7e-93 347.1 288 60.1
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 1.7e-93 347.1 201 80.1
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.7e-93 347.1 209 75.1
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.7e-93 347.1 223 75.3
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 2.2e-93 346.7 210 75.7
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 2.2e-93 346.7 200 79.5
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 2.9e-93 346.3 201 81.6
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 2.9e-93 346.3 200 81.5
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 2.9e-93 346.3 223 73.1
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 5.0e-93 345.5 294 59.9
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 6.5e-93 345.1 239 70.3
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 8.5e-93 344.7 210 76.2
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 8.5e-93 344.7 210 75.7
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 8.5e-93 344.7 210 76.2
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 8.5e-93 344.7 203 79.3
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 8.5e-93 344.7 200 81.0
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 8.5e-93 344.7 280 62.5
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.9e-92 343.6 296 61.8
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 6.1e-91 338.6 192 80.2
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 2.3e-90 336.7 239 69.9
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 5.2e-90 335.5 190 81.6
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.5e-89 334.0 190 81.1
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 4.4e-89 332.4 251 68.1
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.7e-88 329.3 211 73.9
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 4.8e-88 328.9 293 58.7
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.1e-87 327.8 211 73.9
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.6e-86 323.9 200 73.5
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 8.5e-85 318.2 211 70.1
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.9e-84 317.0 229 66.4
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.5e-84 316.6 206 68.9
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 7.2e-84 315.1 206 71.8
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.2e-83 314.3 221 65.6
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 1.2e-83 314.3 350 50.9
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 5.2e-82 308.9 223 69.1
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 7.2e-76 288.5 161 81.4
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.5e-73 280.8 200 63.0
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 3.4e-73 279.6 165 75.8
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 3.7e-72 276.2 222 56.8
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 9.2e-71 271.6 143 86.7
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 2.0e-70 270.4 200 63.0
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.0e-69 268.1 161 75.2
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 5.6e-68 262.3 136 89.0
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 5.2e-66 255.8 148 82.4
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 7.5e-65 251.9 148 77.0
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 9.8e-65 251.5 217 61.3
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 1.2e-57 228.0 203 54.2
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 1.8e-50 204.1 119 76.5
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 3.5e-46 189.9 150 63.3
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 8.1e-43 178.7 220 43.6
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 1.8e-42 177.6 156 55.8
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 7.6e-33 145.6 187 50.8
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.6e-30 137.9 116 55.2
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 5.4e-23 112.8 83 57.8
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 3.7e-19 100.1 63 76.2
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 6.2e-19 99.4 70 71.4
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 3.2e-15 87.0 80 58.8
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.1e-14 84.3 67 64.2
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 6.0e-14 82.8 47 83.0
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 1.0e-13 82.0 46 87.0
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 1.8e-10 71.2 43 76.7
TPR.G14067 Trifolium pratense HOM05D005195 ORTHO05D006088 1.9e-07 61.2 82 47.6
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 6.1e-06 56.2 37 67.6


User provided reference genes

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