Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1738.0 853 100.0
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 0.0e+00 1508.8 854 86.5
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1322.8 850 75.3
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 0.0e+00 1316.6 855 74.6
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 0.0e+00 1305.8 851 75.4
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 0.0e+00 1295.0 844 75.2
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 0.0e+00 1273.5 856 74.4
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 0.0e+00 1243.8 856 72.2
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 0.0e+00 1219.1 850 70.5
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 0.0e+00 1145.2 862 66.7
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 0.0e+00 1104.4 755 72.8
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1099.7 871 64.6
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 0.0e+00 1095.5 871 64.4
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 4.3e-305 1051.2 1084 53.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-272 943.0 805 61.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 6.2e-272 941.0 753 64.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.4e-268 929.9 897 54.3
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 6.7e-258 894.4 904 51.9
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 7.2e-252 874.4 897 52.5
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 9.4e-252 874.0 859 52.7
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.1e-247 859.0 855 52.4
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.5e-246 856.7 913 49.2
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.4e-244 850.1 856 52.1
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 7.7e-238 827.8 918 47.9
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 6.5e-237 824.7 882 50.3
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.2e-236 822.4 918 47.9
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.5e-233 813.5 894 48.2
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 3.3e-233 812.4 859 50.2
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 3.1e-231 805.8 896 47.1
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 7.0e-231 804.7 894 48.0
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 9.1e-231 804.3 865 48.3
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 3.5e-230 802.4 916 47.6
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.3e-229 800.4 885 48.0
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.9e-228 796.6 849 49.5
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 4.0e-226 788.9 797 52.1
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 9.7e-225 784.3 872 47.1
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 4.8e-224 781.9 891 47.0
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.4e-223 780.4 914 47.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.8e-223 780.0 891 46.9
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.9e-222 775.0 890 46.4
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 8.0e-219 764.6 874 46.8
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 4.4e-217 758.8 1113 40.3
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 4.5e-214 748.8 1110 39.5
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 8.0e-211 738.0 1115 39.5
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.8e-210 736.9 877 47.3
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 6.3e-208 728.4 856 47.1
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.8e-207 726.9 890 43.9
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 1.2e-206 724.2 904 43.5
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 2.0e-206 723.4 900 44.2
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 3.3e-204 716.1 895 44.4
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.2e-203 714.1 563 63.9
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.6e-203 713.8 1117 38.1
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 4.7e-203 712.2 1101 38.2
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 6.1e-203 711.8 879 43.8
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 4.0e-202 709.1 904 43.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 5.2e-202 708.8 909 42.6
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 8.9e-202 708.0 904 43.5
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.5e-201 707.2 891 45.3
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 4.4e-201 705.7 901 42.8
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 7.5e-201 704.9 906 43.2
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 9.8e-201 704.5 904 43.1
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 8.3e-200 701.4 887 43.4
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.9e-199 700.3 878 43.7
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 7.0e-199 698.4 909 42.4
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 7.8e-198 694.9 888 42.2
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 5.6e-196 688.7 931 40.3
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 8.0e-195 684.9 869 45.5
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 8.3e-192 674.9 892 42.2
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 8.3e-192 674.9 515 68.2
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.4e-191 674.1 904 41.6
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 6.0e-190 668.7 847 44.0
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 5.6e-188 662.1 1102 36.0
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.4e-183 647.5 807 46.3
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 9.6e-180 634.8 847 43.6
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 5.2e-178 629.0 852 44.0
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.0e-177 627.1 882 41.2
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 3.4e-177 626.3 902 39.9
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 9.9e-177 624.8 650 49.5
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.7e-174 616.7 882 40.8
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.7e-173 614.0 866 41.2
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 6.6e-173 612.1 757 46.4
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 8.7e-173 611.7 1091 35.0
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.4e-170 603.6 624 50.0
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 2.3e-165 587.0 836 42.3
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.1e-165 585.9 784 42.7
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 9.0e-162 575.1 1061 36.4
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.7e-160 570.9 916 38.3
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 9.6e-156 555.1 1064 33.3
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.0e-153 547.4 967 33.2
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.2e-151 540.0 833 39.4
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 4.8e-147 526.2 755 40.4
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.3e-144 518.1 1033 31.9
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 3.0e-141 506.9 979 33.6
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.9e-141 506.5 696 40.1
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 3.4e-137 493.4 495 52.1
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 3.6e-126 456.8 705 39.3
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 4.4e-124 449.9 498 46.0
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 1.8e-122 444.5 608 42.3
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 9.4e-119 432.2 536 44.2
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 4.1e-114 416.8 947 30.0
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 5.3e-114 416.4 600 42.0
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 1.0e-109 402.1 850 33.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 9.8e-108 395.6 476 44.1
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 1.8e-106 391.3 593 37.3
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.3e-104 385.2 947 30.0
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 1.4e-98 365.2 950 29.5
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 3.0e-93 347.4 387 47.8
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 4.9e-91 340.1 719 32.1
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 4.7e-86 323.6 706 31.0
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 5.6e-79 300.1 452 40.0
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 1.1e-74 285.8 467 36.2
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 5.2e-69 266.9 368 38.9
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 6.0e-65 253.4 309 45.0
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.9e-63 248.4 369 39.3
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 6.2e-62 243.4 253 50.6
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.1e-61 241.1 680 28.7
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 1.7e-59 235.3 948 24.4
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 6.4e-59 233.4 212 56.1
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 6.9e-53 213.4 151 64.2
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.0e-52 211.8 177 55.4
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.3e-51 209.1 154 60.4
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 3.5e-49 201.1 154 57.8
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 7.4e-47 193.4 275 41.8
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 5.8e-44 183.7 206 44.7
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.9e-43 181.4 199 43.7
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 1.6e-41 175.6 155 52.3
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 2.3e-32 145.2 409 29.1
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 2.1e-30 138.7 84 73.8
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.1e-29 136.3 756 24.3
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 5.5e-26 124.0 104 54.8
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.2e-22 112.1 114 51.8
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 3.7e-22 111.3 95 51.6
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 3.8e-19 101.3 120 46.7
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 2.8e-14 85.1 112 42.0
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 1.9e-10 72.4 194 29.9
Medtr4g008310 Medicago truncatula HOM05D000838 ORTHO05D000656 4.8e-06 57.8 33 75.8


User provided reference genes

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