Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 2.3e-77 292.4 168 100.0
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.4e-37 160.2 151 60.3
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 4.0e-37 158.7 145 62.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 8.8e-37 157.5 142 64.1
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 9.7e-36 154.1 145 62.1
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.2e-35 152.9 141 60.3
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 4.8e-35 151.8 150 58.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 4.8e-35 151.8 150 60.7
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 4.8e-35 151.8 155 59.4
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 8.2e-35 151.0 153 58.2
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.1e-34 150.6 145 60.7
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.4e-34 149.4 131 62.6
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.1e-34 149.1 150 58.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 5.3e-34 148.3 131 63.4
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-33 147.1 131 62.6
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.2e-33 147.1 149 57.7
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.0e-33 146.4 132 60.6
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.7e-33 146.0 150 56.0
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 3.5e-33 145.6 141 58.2
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 4.5e-33 145.2 135 60.0
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.5e-33 145.2 139 59.7
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.5e-33 145.2 144 56.2
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.5e-33 145.2 144 56.2
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 4.5e-33 145.2 142 57.0
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.9e-33 144.8 144 56.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.0e-32 144.1 141 56.7
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.3e-32 143.7 139 58.3
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.3e-32 143.7 151 54.3
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.7e-32 143.3 131 61.1
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.9e-32 142.5 135 58.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.8e-32 142.1 142 57.0
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.8e-32 142.1 131 58.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.0e-32 141.7 143 57.3
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 5.0e-32 141.7 142 57.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.0e-32 141.7 142 57.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 5.0e-32 141.7 136 58.1
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.0e-32 141.7 130 60.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.1e-31 140.6 150 55.3
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.9e-31 139.8 142 56.3
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.9e-31 139.8 142 56.3
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.5e-31 139.4 142 56.3
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.5e-31 139.4 136 55.9
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.2e-31 138.7 151 53.6
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 4.2e-31 138.7 149 55.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 5.5e-31 138.3 129 58.1
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 5.5e-31 138.3 146 54.1
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.5e-31 138.3 131 58.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 7.2e-31 137.9 136 56.6
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.4e-31 137.5 130 56.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.2e-30 137.1 129 58.1
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.6e-30 136.7 137 54.7
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-30 136.3 130 56.2
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-30 136.3 130 55.4
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.1e-30 136.3 149 52.3
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.1e-30 136.3 151 51.7
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.7e-30 136.0 131 58.0
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.7e-30 136.0 131 58.0
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.6e-30 135.6 157 51.6
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.6e-30 135.6 174 48.9
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 4.7e-30 135.2 130 55.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 4.7e-30 135.2 130 56.9
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 4.7e-30 135.2 151 53.6
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.7e-30 135.2 139 54.7
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 4.7e-30 135.2 148 52.0
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 8.0e-30 134.4 151 49.7
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 8.0e-30 134.4 139 51.1
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.8e-29 133.3 149 53.0
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.8e-29 133.3 146 51.4
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.8e-29 133.3 150 50.7
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.8e-29 133.3 149 52.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.0e-29 132.5 199 44.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.0e-29 132.5 129 55.0
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 3.0e-29 132.5 131 55.0
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 3.0e-29 132.5 130 56.2
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 4.0e-29 132.1 111 58.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 4.0e-29 132.1 135 54.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 5.2e-29 131.7 130 54.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 5.2e-29 131.7 151 52.3
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 5.2e-29 131.7 130 56.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 6.8e-29 131.3 130 54.6
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 6.8e-29 131.3 154 51.3
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 8.8e-29 131.0 131 54.2
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 8.8e-29 131.0 139 53.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 8.8e-29 131.0 153 52.3
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-28 130.6 149 52.3
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.5e-28 130.2 125 56.0
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.0e-28 129.8 131 54.2
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.0e-28 129.8 130 53.8
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 2.6e-28 129.4 130 53.8
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.6e-28 129.4 144 50.7
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.6e-28 129.4 138 55.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.4e-28 128.6 140 54.3
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 7.5e-28 127.9 130 53.8
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 7.5e-28 127.9 130 53.8
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 7.5e-28 127.9 130 53.1
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 7.5e-28 127.9 149 52.3
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 9.8e-28 127.5 160 48.8
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 9.8e-28 127.5 125 55.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 9.8e-28 127.5 148 50.0
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 9.8e-28 127.5 131 54.2
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.3e-27 127.1 140 49.3
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.7e-27 126.7 130 53.8
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.2e-27 126.3 146 50.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 2.2e-27 126.3 129 53.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.8e-27 125.9 150 50.7
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 3.7e-27 125.6 130 53.1
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 3.7e-27 125.6 192 43.8
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 4.8e-27 125.2 184 46.2
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 4.8e-27 125.2 124 53.2
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 6.3e-27 124.8 149 50.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 6.3e-27 124.8 131 51.9
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 6.3e-27 124.8 135 51.1
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 6.3e-27 124.8 140 49.3
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 8.3e-27 124.4 138 49.3
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.8e-26 123.2 145 50.3
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.8e-26 123.2 137 50.4
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.8e-26 123.2 131 55.0
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.8e-26 123.2 209 39.2
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 4.1e-26 122.1 141 50.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.7e-25 119.4 111 55.0
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.9e-24 115.9 113 54.0
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.5e-24 114.8 107 55.1
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 6.5e-24 114.8 233 35.6
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.5e-23 112.8 125 52.0
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 4.7e-22 108.6 146 46.6
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 4.7e-22 108.6 110 50.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 6.1e-22 108.2 110 46.4
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.1e-18 97.4 66 74.2
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.4e-18 95.1 78 61.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 5.6e-15 85.1 70 55.7
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.7e-14 82.0 85 56.5
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 8.0e-14 81.3 97 41.2
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 4.0e-13 79.0 65 55.4
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 5.2e-13 78.6 79 51.9
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.2e-11 73.2 77 53.2
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-10 70.9 90 45.6
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 2.4e-10 69.7 101 44.6
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.6e-09 67.0 79 51.9
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 5.0e-08 62.0 108 32.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 6.2e-06 55.1 95 35.8


User provided reference genes

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