Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 0.0e+00 1153.3 579 100.0
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 1.3e-297 1025.8 552 92.0
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 6.1e-295 1016.9 552 91.1
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 6.1e-295 1016.9 555 90.8
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 3.3e-293 1011.1 558 89.4
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.3e-292 1009.2 558 89.2
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.2e-290 1002.7 556 89.6
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 2.6e-290 1001.5 558 89.1
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 7.2e-288 993.4 548 89.8
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 2.0e-285 985.3 552 88.6
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 3.3e-285 984.6 565 87.3
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 7.4e-285 983.4 546 88.6
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 1.1e-283 979.5 547 88.8
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.1e-283 979.5 550 88.0
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 5.3e-283 977.2 545 88.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.2e-282 976.1 549 88.0
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 2.0e-282 975.3 549 87.8
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 3.5e-282 974.5 549 87.4
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 5.9e-282 973.8 547 88.1
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.0e-281 973.0 566 86.0
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.3e-281 972.6 552 87.1
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 2.2e-281 971.8 547 87.6
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 2.9e-281 971.5 543 88.4
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 6.5e-281 970.3 552 86.6
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 6.5e-281 970.3 545 87.9
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 1.9e-280 968.8 545 87.9
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.6e-279 965.7 546 86.3
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.0e-278 963.0 547 87.6
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 3.9e-278 961.1 547 86.3
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 8.8e-278 959.9 547 86.8
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 3.3e-277 958.0 549 85.6
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 4.4e-277 957.6 547 87.2
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 7.4e-277 956.8 545 85.7
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 7.4e-277 956.8 547 86.3
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 7.4e-277 956.8 544 87.5
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.3e-276 956.1 551 86.6
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 4.8e-276 954.1 548 85.9
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 6.3e-276 953.7 549 86.0
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 8.2e-276 953.4 547 85.9
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.8e-275 952.2 551 86.0
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 3.1e-275 951.4 550 84.5
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 3.1e-275 951.4 542 86.9
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.1e-275 951.4 551 86.0
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 4.1e-275 951.0 547 85.6
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 5.3e-275 950.7 547 85.2
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 9.1e-275 949.9 551 84.4
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.5e-274 947.6 553 85.2
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 5.9e-274 947.2 572 83.2
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.7e-273 945.7 547 84.6
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 8.5e-273 943.3 547 84.1
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 8.5e-273 943.3 555 84.5
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.1e-272 943.0 549 85.1
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 1.9e-272 942.2 547 84.1
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 2.5e-272 941.8 541 85.0
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 4.2e-272 941.0 547 84.3
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 9.4e-272 939.9 547 83.9
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.2e-271 939.5 549 85.1
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 2.1e-271 938.7 567 83.8
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.6e-271 937.9 555 84.5
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.7e-271 937.6 567 82.7
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 4.7e-271 937.6 549 84.9
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 4.7e-271 937.6 545 83.7
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 6.1e-271 937.2 576 81.8
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.0e-270 936.4 549 83.6
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 2.3e-270 935.3 549 84.2
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 3.0e-270 934.9 548 84.7
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 5.2e-270 934.1 543 84.5
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 6.8e-270 933.7 541 84.3
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 5.7e-269 930.6 544 84.0
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 9.7e-269 929.9 547 84.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 3.7e-268 927.9 543 84.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 6.3e-268 927.2 548 83.9
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.1e-267 926.4 549 83.4
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.8e-267 925.6 548 83.4
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 3.1e-267 924.9 546 84.8
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 7.7e-266 920.2 543 84.0
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 2.5e-264 915.2 550 83.1
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 2.5e-264 915.2 527 85.6
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 3.2e-264 914.8 542 81.9
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 4.2e-264 914.4 547 82.6
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.3e-260 902.9 587 79.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.8e-260 901.7 571 80.0
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.3e-257 892.9 550 80.0
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.8e-257 891.3 545 82.8
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 6.6e-257 890.6 547 82.3
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.1e-255 885.6 562 79.0
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.6e-255 884.8 545 82.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.0e-253 879.0 567 78.3
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 9.8e-253 876.7 545 81.1
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.4e-251 872.1 544 78.5
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 1.3e-249 866.3 612 73.9
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 5.0e-249 864.4 538 78.8
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 2.5e-248 862.1 608 74.2
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 2.8e-247 858.6 550 75.6
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 4.9e-244 847.8 479 86.8
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 5.4e-243 844.3 566 78.1
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 2.0e-242 842.4 544 77.9
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.0e-241 840.1 476 85.7
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.3e-241 839.7 544 77.8
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 5.0e-241 837.8 551 77.9
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 4.7e-239 831.2 553 74.1
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 5.2e-238 827.8 576 74.1
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 1.5e-229 799.7 548 71.5
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 4.9e-228 794.7 547 74.8
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 9.2e-227 790.4 463 83.4
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 4.6e-226 788.1 541 72.1
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 6.0e-226 787.7 441 87.1
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 5.6e-224 781.2 550 70.0
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 1.6e-223 779.6 533 72.4
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.7e-209 733.0 526 71.9
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 1.9e-208 729.6 553 69.4
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 4.3e-192 675.2 535 67.9
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.8e-190 669.8 405 83.0
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 8.4e-188 661.0 537 62.2
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 1.4e-166 590.5 341 86.5
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 2.0e-165 586.6 406 74.6
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 9.4e-163 577.8 510 58.6
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 1.0e-161 574.3 554 58.5
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 3.0e-161 572.8 356 80.6
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.3e-156 557.4 550 53.5
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 4.0e-137 492.7 556 50.2
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.6e-130 470.7 257 91.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 1.7e-95 354.4 205 81.0
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 2.1e-93 347.4 188 86.2
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 1.3e-76 291.6 210 69.5
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.5e-67 260.8 370 45.1
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 3.1e-57 227.3 198 57.1
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 3.0e-52 210.7 123 87.0
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 2.7e-45 187.6 116 81.0
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 5.7e-43 179.9 153 63.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 6.5e-39 166.4 118 66.9
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 2.1e-37 161.4 102 77.5
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 4.2e-30 137.1 314 32.8
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.8e-28 131.7 76 90.8
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 2.0e-27 128.3 312 33.3
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 3.4e-19 100.9 57 82.5
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.8e-17 95.1 58 79.3
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.3e-15 89.0 43 93.0
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 3.6e-13 80.9 126 42.1
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 4.7e-13 80.5 112 46.4
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 3.1e-12 77.8 111 44.1
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 9.8e-11 72.8 45 68.9
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 8.3e-10 69.7 45 73.3
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 1.4e-09 68.9 42 78.6
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 2.0e-08 65.1 94 43.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 3.5e-08 64.3 70 58.6
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 4.6e-08 63.9 35 77.1
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 2.3e-07 61.6 197 25.4
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 1.1e-06 59.3 55 60.0
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 1.5e-06 58.9 197 25.4
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 2.5e-06 58.2 197 24.9
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 5.6e-06 57.0 112 36.6


User provided reference genes

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