Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 0.0e+00 1112.4 538 100.0
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 1.2e-260 902.9 536 81.3
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 1.1e-250 869.8 529 80.5
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 1.2e-247 859.8 531 78.9
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 1.9e-242 842.4 544 77.8
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 6.1e-233 810.8 530 74.7
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.5e-231 806.2 494 79.4
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 3.7e-222 775.0 519 72.1
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 9.5e-218 760.4 483 77.4
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 3.1e-216 755.4 516 72.5
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 2.6e-215 752.3 519 71.3
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.7e-212 742.3 516 70.0
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 3.5e-212 741.9 518 70.3
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 4.6e-212 741.5 513 71.0
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 6.0e-212 741.1 518 70.1
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 1.0e-211 740.3 529 67.9
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 3.0e-211 738.8 528 68.8
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.1e-209 732.6 528 68.9
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 2.8e-209 732.3 534 67.4
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.1e-208 730.3 528 68.0
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 6.8e-208 727.6 520 67.3
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 8.9e-208 727.2 521 67.6
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 4.4e-207 724.9 532 67.3
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 9.9e-207 723.8 531 67.4
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 4.9e-206 721.5 527 66.0
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 4.9e-206 721.5 528 68.0
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 3.2e-205 718.8 527 66.4
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 4.1e-205 718.4 519 67.4
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 2.1e-204 716.1 517 66.7
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 7.8e-204 714.1 520 67.9
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 1.3e-203 713.4 459 76.9
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 2.3e-203 712.6 522 65.7
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 8.6e-203 710.7 525 66.3
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 8.6e-203 710.7 522 67.6
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 1.6e-201 706.4 516 66.5
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 9.9e-199 697.2 523 66.5
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 9.2e-197 690.6 517 65.6
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 2.7e-196 689.1 521 66.6
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 2.7e-196 689.1 515 65.2
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 4.6e-196 688.3 509 66.4
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 7.8e-196 687.6 524 63.5
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 2.8e-193 679.1 523 63.1
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 1.8e-192 676.4 523 62.5
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 2.4e-192 676.0 529 63.9
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 6.9e-192 674.5 523 62.0
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 1.2e-191 673.7 525 62.5
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 1.2e-191 673.7 514 65.0
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 2.6e-191 672.5 523 61.8
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 9.9e-191 670.6 522 63.0
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 1.7e-190 669.8 525 62.1
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 1.7e-190 669.8 525 61.9
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 1.7e-190 669.8 518 64.3
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 2.2e-190 669.5 510 64.1
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 8.4e-190 667.5 632 54.7
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 1.0e-187 660.6 494 65.8
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 1.0e-187 660.6 550 60.2
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 8.7e-187 657.5 477 68.8
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 1.1e-186 657.1 527 63.2
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 7.3e-186 654.4 542 60.3
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 1.3e-185 653.7 523 62.7
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 8.1e-185 651.0 517 61.3
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 3.4e-183 645.6 526 61.0
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 9.9e-183 644.0 418 76.3
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 1.9e-181 639.8 567 57.5
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 1.9e-181 639.8 534 59.2
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 3.2e-181 639.0 522 61.3
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 2.1e-180 636.3 530 62.3
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 5.1e-179 631.7 457 69.1
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 2.1e-177 626.3 606 53.5
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 9.0e-176 620.9 471 66.0
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.0e-175 619.8 532 60.5
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.6e-175 619.4 541 59.3
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 3.8e-174 615.5 473 64.3
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 1.1e-173 614.0 472 64.4
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 1.9e-173 613.2 530 58.9
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 4.6e-172 608.6 532 58.6
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 3.3e-170 602.4 518 59.7
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 4.8e-169 598.6 610 54.8
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 6.9e-168 594.7 543 55.6
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 3.3e-162 575.9 421 67.9
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 3.1e-160 569.3 410 68.8
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 4.1e-160 568.9 429 65.5
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 9.0e-160 567.8 445 64.3
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.9e-158 562.8 377 72.7
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 3.8e-158 562.4 433 64.9
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 4.3e-154 548.9 434 63.1
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 1.8e-152 543.5 411 65.9
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 5.3e-152 542.0 408 65.9
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 1.7e-150 537.0 403 66.3
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 2.2e-150 536.6 571 48.5
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 2.3e-147 526.6 545 49.7
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 6.7e-147 525.0 433 60.7
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 2.0e-146 523.5 479 56.4
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 4.1e-144 515.8 388 66.5
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 2.6e-138 496.5 518 50.0
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 8.2e-137 491.5 379 63.9
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 9.1e-136 488.0 444 57.2
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 5.2e-131 472.2 371 61.5
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 5.7e-130 468.8 529 48.0
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 1.7e-129 467.2 421 56.1
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 4.0e-123 446.0 359 61.8
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 1.6e-119 434.1 358 57.5
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 4.4e-114 416.0 389 56.0
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 2.9e-105 386.7 522 43.5
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 3.5e-95 353.2 273 64.8
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 2.3e-94 350.5 251 68.5
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 5.1e-78 296.2 512 36.3
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 1.9e-72 277.7 420 40.2
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 2.7e-71 273.9 268 53.4
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 1.0e-70 271.9 238 58.0
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 1.8e-62 244.6 136 83.1
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 6.7e-62 242.7 610 31.5
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 2.9e-57 227.3 128 79.7
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 1.9e-48 198.0 339 34.5
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 4.6e-47 193.4 148 60.8
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 2.5e-45 187.6 145 59.3
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 4.2e-40 170.2 109 71.6
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 4.6e-39 166.8 130 56.2
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 1.4e-38 165.2 89 87.6
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 6.7e-38 162.9 89 83.1
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 5.3e-35 153.3 142 60.6
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 5.0e-33 146.7 88 73.9
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 1.1e-24 119.0 71 73.2
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 3.3e-21 107.5 65 78.5
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 8.5e-17 92.8 109 43.1
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 3.0e-14 84.3 44 79.5


User provided reference genes

Program Settings