Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.4e-142 509.6 250 100.0
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 4.0e-118 428.3 250 82.4
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.4e-117 424.9 250 82.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 2.2e-116 422.5 251 80.1
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 1.1e-115 420.2 252 81.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 5.9e-114 414.5 251 78.9
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.3e-113 413.3 252 79.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 2.8e-111 405.6 252 79.0
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.1e-104 383.6 257 76.7
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.7e-100 369.8 251 72.1
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.1e-99 367.1 254 70.5
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 5.4e-99 364.8 254 69.7
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 5.4e-99 364.8 222 77.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.2e-98 363.6 254 72.4
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.1e-98 362.8 243 72.8
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.6e-98 361.7 246 72.4
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 7.8e-98 360.9 251 69.7
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.0e-97 360.5 243 71.2
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.3e-97 360.1 255 67.8
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.7e-97 359.8 259 69.1
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.9e-97 358.6 260 69.6
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 8.6e-97 357.5 256 68.8
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.1e-96 357.1 251 70.5
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.5e-96 355.9 256 68.4
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.5e-96 355.9 253 68.8
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 9.5e-96 354.0 249 68.7
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.6e-95 353.2 243 67.9
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.6e-95 353.2 254 70.9
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.8e-95 352.4 247 69.2
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.8e-95 352.4 222 73.0
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 2.8e-95 352.4 220 75.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.8e-95 352.4 251 68.1
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 3.6e-95 352.1 200 80.5
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.6e-95 352.1 205 77.6
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 6.2e-95 351.3 222 73.0
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 6.2e-95 351.3 227 72.7
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 6.2e-95 351.3 245 69.4
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 8.1e-95 350.9 257 67.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 8.1e-95 350.9 235 70.6
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.8e-94 349.7 248 69.4
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 2.3e-94 349.4 253 65.6
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.3e-94 349.4 247 68.0
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 3.1e-94 349.0 253 68.0
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 3.1e-94 349.0 214 77.6
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 3.1e-94 349.0 214 77.6
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 5.2e-94 348.2 263 65.0
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 5.2e-94 348.2 247 67.6
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 6.8e-94 347.8 257 67.3
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.2e-93 347.1 248 67.3
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.5e-93 346.7 250 67.2
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.5e-93 346.7 250 67.2
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 4.4e-93 345.1 241 69.3
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 7.6e-93 344.4 252 66.7
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.2e-92 342.8 222 74.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 2.9e-92 342.4 209 75.6
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.9e-92 342.4 209 75.6
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.9e-92 342.4 209 75.6
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.8e-92 342.0 257 67.3
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.1e-91 340.5 229 71.6
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.4e-91 340.1 216 74.1
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 7.1e-91 337.8 245 65.3
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 7.1e-91 337.8 236 67.4
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-90 337.0 249 66.3
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 2.7e-90 335.9 223 70.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 4.6e-90 335.1 244 66.0
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 6.0e-90 334.7 245 66.5
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 6.0e-90 334.7 222 72.1
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 7.8e-90 334.3 211 73.0
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.7e-89 333.2 216 70.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.7e-89 333.2 245 66.1
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.7e-89 333.2 245 66.1
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.0e-89 332.4 236 66.5
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 3.9e-89 332.0 259 64.5
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.1e-89 331.6 241 68.5
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 5.1e-89 331.6 250 64.0
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 8.6e-89 330.9 198 75.8
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.1e-88 330.5 224 68.8
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 1.1e-88 330.5 249 64.3
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.1e-88 330.5 224 68.8
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.1e-88 330.5 220 71.4
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 1.5e-88 330.1 248 63.7
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 2.5e-88 329.3 202 74.8
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.5e-88 329.3 202 75.7
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 3.3e-88 328.9 202 74.8
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 3.3e-88 328.9 247 63.6
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.3e-88 328.6 228 68.4
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 7.3e-88 327.8 198 76.3
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 7.3e-88 327.8 202 73.8
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.6e-87 326.6 247 63.2
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.6e-87 326.6 253 61.7
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.1e-87 326.2 201 75.1
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 2.8e-87 325.9 204 74.0
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 2.4e-86 322.8 202 75.2
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 3.1e-86 322.4 258 61.6
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 5.2e-86 321.6 217 69.6
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 6.9e-86 321.2 200 74.0
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 6.9e-86 321.2 251 61.8
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 9.9e-85 317.4 243 63.4
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.4e-84 314.7 256 60.5
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 8.4e-84 314.3 205 69.8
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.9e-83 313.2 340 50.0
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 4.2e-83 312.0 189 74.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 9.3e-83 310.8 251 64.5
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 3.3e-80 302.4 172 80.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.1e-78 295.8 245 61.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 7.1e-75 284.6 148 91.2
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 9.3e-75 284.3 203 64.5
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.2e-68 263.1 177 68.9
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 4.9e-68 261.9 291 49.1
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-63 247.3 231 57.6
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 6.2e-63 245.0 136 83.1
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 4.0e-62 242.3 173 68.2
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 2.5e-59 233.0 181 60.8
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.6e-58 230.3 191 57.1
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.3e-57 226.5 146 73.3
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 3.0e-57 226.1 193 52.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 3.3e-56 222.6 199 55.8
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.1e-54 217.6 119 88.2
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 3.0e-49 199.5 154 62.3
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.8e-46 190.3 106 84.9
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.8e-46 190.3 197 51.3
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.1e-46 189.5 169 56.8
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.2e-45 187.6 190 45.3
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 5.0e-44 182.2 99 89.9
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.9e-43 180.3 126 64.3
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 6.1e-42 175.3 99 81.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 6.7e-41 171.8 99 82.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 6.3e-39 165.2 146 54.1
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.1e-38 164.5 97 79.4
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.2e-37 161.0 133 62.4
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 9.4e-35 151.4 87 83.9
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 3.9e-33 146.0 153 49.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 9.1e-30 134.8 84 67.9
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.5e-27 127.5 183 42.6
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 4.7e-26 122.5 101 56.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.0e-25 121.3 92 68.5
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.4e-25 120.9 89 69.7
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 3.0e-25 119.8 89 67.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 3.0e-25 119.8 89 67.4
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 4.0e-25 119.4 69 81.2
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 5.2e-25 119.0 88 69.3
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 8.8e-25 118.2 184 34.2
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.8e-23 113.2 101 60.4
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 3.5e-21 106.3 103 54.4
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 3.6e-18 96.3 182 31.9
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 4.0e-17 92.8 83 57.8
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 7.0e-14 82.0 105 48.6
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 7.0e-14 82.0 117 32.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.0e-13 80.5 44 84.1
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.0e-13 80.5 44 84.1
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 2.7e-13 80.1 48 77.1
Medtr1g097880 Medicago truncatula HOM05D004920 ORTHO05D005998 4.5e-13 79.3 88 53.4
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 2.5e-11 73.6 42 83.3
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.6e-10 70.9 55 63.6
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 3.6e-10 69.7 56 62.5
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.7e-10 69.3 75 40.0
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 1.0e-09 68.2 47 70.2
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 1.4e-09 67.8 42 76.2
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 4.0e-09 66.2 77 41.6
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.2e-09 65.9 40 75.0
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 5.2e-09 65.9 61 45.9


User provided reference genes

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