Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.0e-218 763.1 377 100.0
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 4.4e-177 624.8 377 81.2
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.2e-168 595.9 377 78.8
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 3.2e-164 582.0 382 77.0
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 1.0e-162 577.0 365 78.9
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 2.2e-160 569.3 378 75.4
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 2.2e-160 569.3 377 75.6
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.4e-159 566.6 378 74.9
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 4.1e-159 565.1 378 74.9
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.7e-158 562.4 377 74.5
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 3.2e-151 538.9 377 71.1
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.6e-147 526.6 397 66.0
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 5.6e-140 501.5 380 66.8
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 2.3e-138 496.1 395 63.0
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 4.0e-138 495.4 380 66.6
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.9e-135 486.5 398 62.3
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.0e-133 479.2 391 61.9
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 6.6e-133 478.0 399 61.9
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 7.3e-132 474.6 396 62.6
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.8e-130 469.9 391 62.1
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 4.0e-130 468.8 399 60.9
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 8.9e-130 467.6 413 59.3
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.2e-129 467.2 311 71.1
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 9.9e-129 464.2 367 63.5
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 3.2e-127 459.1 401 59.4
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.2e-126 457.2 318 67.0
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 2.7e-126 456.1 320 68.1
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.6e-126 455.3 341 64.2
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 6.0e-126 454.9 388 58.8
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 8.6e-125 451.1 388 59.8
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.5e-124 450.3 399 57.1
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 3.3e-124 449.1 392 57.1
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 9.6e-124 447.6 403 59.3
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.6e-123 446.8 389 61.4
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.6e-123 446.8 392 60.2
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.8e-123 446.0 338 65.4
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 4.7e-123 445.3 390 58.7
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.4e-122 443.7 392 55.4
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 1.8e-122 443.4 407 55.5
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 5.2e-122 441.8 400 59.5
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 8.9e-122 441.0 344 63.7
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 2.0e-121 439.9 392 55.1
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.0e-121 439.9 388 59.0
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 4.4e-121 438.7 386 57.3
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 4.4e-121 438.7 386 57.3
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 5.8e-121 438.3 374 58.0
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.3e-120 437.2 327 62.7
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.3e-120 437.2 325 64.9
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.7e-120 436.8 392 55.6
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 1.7e-120 436.8 334 62.0
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 6.4e-120 434.9 392 55.1
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.1e-119 434.1 350 60.9
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 4.2e-119 432.2 388 56.4
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 4.2e-119 432.2 321 68.2
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 5.4e-119 431.8 386 56.5
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 5.4e-119 431.8 387 55.0
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 9.3e-119 431.0 462 51.9
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.2e-118 430.6 388 55.4
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.6e-118 430.3 386 55.4
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.6e-118 430.3 398 54.8
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 1.0e-117 427.6 301 69.8
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.7e-117 426.8 415 57.1
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 3.0e-117 426.0 391 55.2
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 6.6e-117 424.9 324 63.0
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 6.6e-117 424.9 306 64.1
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 6.6e-117 424.9 392 54.6
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 8.7e-117 424.5 392 54.6
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 9.6e-116 421.0 395 56.2
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.6e-115 419.1 306 63.4
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 6.2e-115 418.3 320 61.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 1.4e-114 417.2 320 61.2
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 3.1e-114 416.0 320 61.2
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 3.4e-113 412.5 396 52.5
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.4e-113 412.5 308 62.0
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 7.6e-113 411.4 328 59.8
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 7.6e-113 411.4 401 52.4
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 7.6e-113 411.4 308 62.7
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.9e-111 406.8 306 62.7
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.3e-109 400.6 317 61.2
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 1.7e-109 400.2 332 58.7
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 2.3e-109 399.8 370 55.4
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 6.6e-109 398.3 317 60.6
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.1e-108 397.5 387 52.5
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 9.6e-108 394.4 382 52.9
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 2.8e-107 392.9 326 58.9
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 6.2e-107 391.7 276 68.1
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.8e-106 390.2 381 54.1
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.8e-106 390.2 382 54.5
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 5.3e-106 388.7 314 59.9
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 9.0e-106 387.9 388 51.5
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 3.4e-105 386.0 401 50.9
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.3e-104 384.0 328 59.8
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.7e-104 383.6 331 60.1
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.1e-103 380.9 400 50.5
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.4e-103 380.6 378 51.9
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 3.2e-103 379.4 380 56.8
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 3.5e-102 375.9 384 53.1
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 7.4e-100 368.2 325 56.3
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 9.0e-98 361.3 304 56.6
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 2.6e-97 359.8 321 54.5
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 2.9e-96 356.3 225 72.0
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 3.2e-95 352.8 320 54.1
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.3e-93 347.4 333 54.4
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 2.8e-91 339.7 321 50.5
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.5e-89 334.0 297 55.2
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.9e-88 329.7 272 59.9
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 3.2e-87 326.2 447 44.5
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 4.2e-87 325.9 304 54.9
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.3e-85 320.9 358 50.6
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 9.4e-79 298.1 267 55.8
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.6e-78 297.4 280 56.1
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.7e-76 288.9 230 60.9
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 3.1e-74 283.1 271 54.6
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.4e-61 241.1 248 54.8
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 4.8e-59 232.6 258 50.4
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 2.0e-57 227.3 241 51.5
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 2.3e-53 213.8 279 41.9
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 5.4e-42 176.0 121 68.6
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.5e-41 173.3 132 63.6
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.5e-36 157.9 124 65.3
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 3.7e-35 153.3 179 45.8
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 4.9e-35 152.9 321 29.0
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 4.1e-34 149.8 77 89.6
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 2.5e-31 140.6 318 28.0
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 7.0e-26 122.5 150 39.3
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 2.0e-25 120.9 86 70.9
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 2.3e-24 117.5 211 40.3
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.9e-23 114.4 91 62.6
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 7.3e-23 112.5 213 34.7
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.6e-22 111.3 284 26.4
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.6e-22 111.3 246 28.0
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.1e-22 110.9 68 70.6
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.7e-19 101.3 90 61.1
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 5.4e-18 96.3 110 46.4
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.0e-12 77.8 70 61.4
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 5.8e-12 76.3 304 22.4
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.7e-11 74.7 67 49.3
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.1e-08 63.2 39 66.7
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 7.3e-07 59.3 136 32.4
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 7.3e-07 59.3 136 32.4


User provided reference genes

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