Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 6.8e-182 640.6 335 100.0
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 3.3e-120 435.6 338 70.1
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 3.1e-118 429.1 338 69.8
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 1.5e-112 410.2 346 67.3
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 7.0e-110 401.4 343 66.2
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 3.2e-107 392.5 321 68.5
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 7.5e-104 381.3 339 65.8
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 9.5e-99 364.4 338 62.7
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 5.0e-92 342.0 354 59.6
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 1.2e-85 320.9 344 58.7
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 1.0e-84 317.8 344 58.4
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 7.3e-83 311.6 342 55.0
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 2.1e-82 310.1 262 67.6
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 8.0e-82 308.1 337 55.8
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 1.1e-81 307.8 319 57.7
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 4.0e-81 305.8 335 55.5
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 1.2e-80 304.3 390 51.8
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 2.0e-80 303.5 337 56.4
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 5.8e-80 302.0 336 55.4
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 7.5e-80 301.6 335 54.3
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 2.2e-79 300.1 339 54.3
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 6.0e-77 292.0 340 53.2
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 1.0e-76 291.2 338 53.0
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 2.3e-76 290.0 331 52.6
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 5.0e-76 288.9 352 51.4
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 6.2e-74 282.0 326 56.4
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 6.2e-74 282.0 337 52.8
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 1.1e-73 281.2 352 51.7
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.4e-73 280.8 337 53.7
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 1.4e-73 280.8 342 52.0
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 6.8e-73 278.5 330 52.4
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 2.0e-72 276.9 340 52.1
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 2.6e-72 276.6 341 50.4
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 5.8e-72 275.4 324 51.5
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 9.9e-72 274.6 338 51.2
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.3e-71 274.2 302 56.0
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 1.3e-71 274.2 317 53.6
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.2e-71 273.5 320 54.1
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 4.9e-71 272.3 338 50.3
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 4.9e-71 272.3 361 49.3
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 3.2e-70 269.6 337 52.8
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 3.2e-70 269.6 337 50.7
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 4.1e-70 269.2 344 51.5
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 2.7e-69 266.5 351 49.6
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 3.5e-69 266.2 335 49.9
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 3.5e-69 266.2 344 50.0
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 3.5e-69 266.2 312 53.5
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 7.8e-69 265.0 336 50.0
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.0e-68 264.6 360 48.6
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 1.3e-68 264.2 342 51.2
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 1.7e-68 263.8 342 50.0
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.3e-68 263.5 340 50.0
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 5.1e-68 262.3 290 54.1
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 6.6e-68 261.9 330 49.1
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 7.3e-67 258.5 324 49.1
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.6e-66 257.3 324 49.4
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 2.1e-66 256.9 336 50.0
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 4.7e-66 255.8 340 48.8
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 4.7e-66 255.8 324 48.1
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 8.1e-66 255.0 321 49.2
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 1.4e-65 254.2 336 49.4
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 1.4e-65 254.2 297 51.2
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 4.0e-65 252.7 336 49.4
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 8.9e-65 251.5 335 48.7
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 8.9e-65 251.5 334 49.7
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 9.9e-64 248.1 337 48.1
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 1.7e-63 247.3 305 51.5
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 2.9e-63 246.5 217 63.1
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.8e-63 246.1 326 50.9
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 8.4e-63 245.0 350 45.7
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 8.4e-63 245.0 335 46.6
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 8.4e-63 245.0 337 45.7
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.1e-62 244.6 340 47.6
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 1.1e-62 244.6 347 47.0
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 2.4e-62 243.4 341 48.4
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 3.2e-62 243.0 294 50.7
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.6e-61 240.7 337 44.2
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 2.7e-61 240.0 332 49.7
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 2.7e-61 240.0 356 46.3
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 2.7e-61 240.0 339 46.0
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 3.5e-61 239.6 335 47.8
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 2.3e-60 236.9 332 47.6
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 3.9e-60 236.1 370 44.3
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 5.1e-60 235.7 337 46.3
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 5.1e-60 235.7 356 45.2
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 1.1e-59 234.6 338 47.3
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 1.1e-59 234.6 339 46.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.5e-59 234.2 277 52.3
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 2.5e-59 233.4 250 53.6
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 3.3e-59 233.0 213 61.5
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 7.3e-59 231.9 321 47.4
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 9.6e-59 231.5 348 44.3
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 8.1e-58 228.4 335 45.7
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.1e-57 226.5 306 47.1
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 9.0e-57 224.9 325 47.7
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.0e-56 223.8 360 43.9
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 9.9e-56 221.5 301 47.8
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 1.3e-55 221.1 398 42.7
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 2.2e-55 220.3 307 48.5
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 8.4e-55 218.4 368 44.0
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.1e-54 218.0 346 46.0
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 1.4e-54 217.6 281 47.0
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 3.2e-54 216.5 250 52.8
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 3.2e-54 216.5 289 48.4
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 3.5e-53 213.0 169 68.0
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 6.6e-52 208.8 319 46.1
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 9.6e-51 204.9 342 42.4
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 9.6e-51 204.9 304 45.7
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 3.6e-50 203.0 338 43.8
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 6.9e-49 198.7 514 33.7
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 2.0e-48 197.2 259 49.0
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 1.1e-46 191.4 206 53.9
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 7.1e-46 188.7 234 54.3
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 1.6e-45 187.6 201 54.2
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 7.9e-45 185.3 362 40.1
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 1.9e-43 180.6 343 39.7
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 1.6e-42 177.6 151 65.6
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 4.0e-41 172.9 210 50.5
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 7.6e-40 168.7 334 41.9
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 1.7e-39 167.5 341 40.2
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.5e-32 144.4 112 68.8
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 5.8e-32 142.5 245 41.6
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 4.9e-31 139.4 114 65.8
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 1.3e-28 131.3 149 50.3
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 1.8e-28 131.0 220 41.4
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 3.3e-27 126.7 111 63.1
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 5.7e-27 125.9 113 62.8
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 1.7e-23 114.4 240 36.7
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.4e-20 104.8 199 42.2
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 3.9e-20 103.2 173 40.5
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 2.4e-17 94.0 103 53.4
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 5.3e-17 92.8 68 69.1
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 2.0e-16 90.9 215 35.8
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 3.4e-16 90.1 80 58.8
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.3e-15 88.2 179 35.8
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.3e-15 88.2 179 35.8
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 1.4e-14 84.7 336 30.4
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 8.8e-12 75.5 82 53.7
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 2.0e-08 64.3 159 37.7
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 5.0e-07 59.7 52 59.6


User provided reference genes

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