Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 9.3e-265 916.4 481 100.0
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 1.1e-204 716.8 483 76.0
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.6e-200 703.0 482 74.9
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 8.0e-200 700.7 481 75.1
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 6.8e-199 697.6 498 73.1
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 2.6e-198 695.7 485 73.8
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 5.7e-198 694.5 496 72.6
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 4.1e-196 688.3 495 72.7
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 2.8e-192 675.6 485 71.5
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 1.8e-191 672.9 487 72.1
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.6e-171 606.7 506 61.3
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 8.6e-170 600.9 495 61.4
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.9e-169 599.7 502 61.0
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 4.9e-165 585.1 456 64.7
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.9e-164 583.2 491 60.5
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 3.2e-164 582.4 475 61.9
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.2e-163 580.5 450 64.9
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 3.5e-163 578.9 442 64.7
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 8.6e-162 574.3 442 66.5
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.1e-161 573.9 492 60.6
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 5.6e-161 571.6 486 60.9
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 3.6e-160 568.9 436 64.4
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.1e-160 567.8 503 58.4
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 1.4e-159 567.0 498 60.0
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.8e-159 566.6 435 63.7
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 6.8e-159 564.7 463 60.3
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 4.4e-158 562.0 442 63.3
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 5.8e-158 561.6 385 70.1
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 7.6e-158 561.2 442 63.1
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.7e-157 560.1 503 57.9
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.4e-156 557.0 441 62.8
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.9e-156 556.6 503 57.5
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 3.2e-156 555.8 441 62.4
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 3.5e-155 552.4 490 58.0
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 6.0e-155 551.6 452 62.4
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.3e-154 550.4 437 63.8
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 3.9e-154 548.9 448 61.8
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 5.6e-153 545.0 483 58.8
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 9.6e-153 544.3 441 61.5
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.8e-152 542.7 476 59.5
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 8.1e-152 541.2 446 61.9
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 1.1e-151 540.8 440 60.9
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 6.9e-151 538.1 448 61.2
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.5e-150 537.0 477 58.3
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 1.5e-150 537.0 437 60.2
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 2.6e-150 536.2 470 57.7
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 3.4e-150 535.8 449 61.5
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.8e-149 532.3 401 63.6
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 4.9e-149 531.9 479 58.0
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.4e-149 531.6 401 63.3
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 8.4e-149 531.2 452 60.2
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.4e-148 530.4 447 61.1
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.4e-148 530.4 459 60.3
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.6e-147 526.9 503 55.5
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.7e-147 526.2 446 60.1
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 7.8e-147 524.6 462 59.3
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 3.0e-146 522.7 456 59.4
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 4.8e-144 515.4 458 58.7
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 6.2e-144 515.0 445 58.2
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.4e-143 513.1 446 58.3
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 4.0e-143 512.3 441 58.3
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 5.3e-143 511.9 447 58.4
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.5e-142 510.4 476 55.9
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 2.0e-142 510.0 468 58.8
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 3.4e-142 509.2 446 58.3
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.4e-142 509.2 441 58.0
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 5.8e-142 508.4 442 57.9
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 7.6e-142 508.1 434 60.4
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 4.9e-141 505.4 439 58.3
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 2.1e-139 500.0 476 56.5
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 3.5e-139 499.2 398 61.3
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 6.0e-139 498.4 431 57.8
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 7.9e-139 498.0 450 56.7
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 6.7e-138 495.0 470 56.4
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 6.7e-138 495.0 459 55.6
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 6.7e-138 495.0 439 56.0
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.6e-136 490.3 341 69.8
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 2.8e-136 489.6 454 57.0
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 2.8e-136 489.6 435 60.5
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 4.8e-136 488.8 474 56.8
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 1.1e-135 487.6 435 59.5
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 2.4e-135 486.5 477 56.2
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.2e-134 484.2 442 58.8
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.8e-133 479.2 443 57.3
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 6.5e-133 478.4 434 59.2
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.6e-131 473.8 470 54.3
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.7e-131 473.0 429 59.7
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.0e-130 471.1 434 57.8
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.3e-130 470.7 469 54.6
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 3.9e-130 469.2 401 61.3
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 8.7e-130 468.0 470 54.0
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 2.5e-129 466.5 470 54.0
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 8.4e-125 451.4 336 65.2
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 1.2e-118 431.0 449 51.7
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 5.7e-113 412.1 485 47.4
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 1.5e-110 404.1 436 50.0
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.1e-108 397.9 342 62.9
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.9e-108 397.1 427 50.1
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 2.7e-107 393.3 402 51.7
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.8e-103 380.6 393 52.7
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 8.5e-101 371.7 395 49.9
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.5e-100 370.9 407 48.4
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 1.5e-92 344.4 316 58.5
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.0e-83 312.0 220 66.4
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.2e-70 271.6 334 48.2
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.9e-70 269.2 192 64.6
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 6.6e-69 265.8 393 40.5
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 6.4e-56 222.6 196 59.2
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 3.6e-43 180.3 238 44.5
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 2.5e-36 157.5 362 30.9
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 1.1e-34 152.1 122 68.0
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 4.3e-28 130.2 106 56.6
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 1.1e-26 125.6 86 76.7
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.3e-24 118.6 137 49.6
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.8e-18 98.2 285 31.2
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 3.1e-18 97.4 186 30.1
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 3.1e-18 97.4 186 30.1
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 8.7e-13 79.3 300 20.3
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 6.3e-11 73.2 101 48.5
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 8.4e-08 62.8 131 25.2
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.9e-07 61.6 85 43.5
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.2e-06 58.9 124 23.4
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.1e-06 58.2 135 23.7
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.7e-06 57.8 142 23.2
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 3.5e-06 57.4 135 23.7
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 3.5e-06 57.4 135 23.7
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 3.5e-06 57.4 135 23.0
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 4.6e-06 57.0 135 22.2
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 6.1e-06 56.6 137 25.5
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 6.1e-06 56.6 137 25.5


User provided reference genes

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