Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 4.8e-60 234.2 108 100.0
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 1.3e-36 156.4 115 65.2
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 6.5e-33 144.1 114 62.3
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 1.8e-30 136.0 105 62.9
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 3.9e-30 134.8 117 56.4
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 5.9e-26 120.9 120 54.2
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 1.7e-25 119.4 114 56.1
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 1.7e-25 119.4 79 70.9
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 1.9e-24 115.9 122 56.6
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 2.6e-18 95.5 112 46.4
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 1.3e-17 93.2 50 76.0
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 2.5e-16 89.0 51 72.5
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 2.5e-16 89.0 51 72.5
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 5.5e-16 87.8 103 44.7
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 5.5e-16 87.8 51 70.6
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 7.2e-16 87.4 45 80.0
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 9.4e-16 87.0 47 72.3
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 9.4e-16 87.0 49 75.5
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 9.4e-16 87.0 49 75.5
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 9.4e-16 87.0 49 75.5
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 1.2e-15 86.7 46 76.1
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 1.2e-15 86.7 46 76.1
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 1.2e-15 86.7 46 76.1
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 1.2e-15 86.7 126 42.1
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 1.2e-15 86.7 67 61.2
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 2.1e-15 85.9 46 78.3
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 2.1e-15 85.9 49 73.5
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 2.7e-15 85.5 50 74.0
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 3.6e-15 85.1 101 49.5
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 3.6e-15 85.1 56 64.3
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 3.6e-15 85.1 56 64.3
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 4.7e-15 84.7 49 69.4
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 4.7e-15 84.7 102 47.1
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 1.4e-14 83.2 38 84.2
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 1.4e-14 83.2 38 84.2
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 1.4e-14 83.2 45 75.6
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 2.3e-14 82.4 51 64.7
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 2.3e-14 82.4 71 53.5
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 5.2e-14 81.3 65 58.5
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 6.7e-14 80.9 97 45.4
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 6.7e-14 80.9 65 53.8
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 8.8e-14 80.5 42 73.8
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 1.5e-13 79.7 97 44.3
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 1.5e-13 79.7 55 61.8
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 2.0e-13 79.3 46 67.4
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 2.0e-13 79.3 50 68.0
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 2.0e-13 79.3 50 68.0
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 2.0e-13 79.3 50 68.0
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 2.6e-13 79.0 37 83.8
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 2.6e-13 79.0 61 60.7
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 3.3e-13 78.6 71 50.7
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 3.3e-13 78.6 40 75.0
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 3.3e-13 78.6 47 70.2
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 3.3e-13 78.6 43 74.4
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 3.3e-13 78.6 43 72.1
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 4.4e-13 78.2 37 78.4
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 4.4e-13 78.2 37 78.4
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 4.4e-13 78.2 37 78.4
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 4.4e-13 78.2 102 43.1
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 4.4e-13 78.2 49 67.3
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 5.7e-13 77.8 97 47.4
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 5.7e-13 77.8 47 63.8
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 5.7e-13 77.8 68 51.5
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 7.4e-13 77.4 46 67.4
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 7.4e-13 77.4 101 38.6
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 7.4e-13 77.4 36 80.6
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 9.7e-13 77.0 33 87.9
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 1.3e-12 76.6 57 61.4
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 1.3e-12 76.6 43 72.1
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 1.7e-12 76.3 39 71.8
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 2.2e-12 75.9 31 93.5
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 2.2e-12 75.9 31 93.5
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 2.8e-12 75.5 39 74.4
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 4.8e-12 74.7 54 59.3
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 8.2e-12 73.9 38 76.3
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 8.2e-12 73.9 36 77.8
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 8.2e-12 73.9 40 70.0
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 1.1e-11 73.6 37 73.0
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 1.1e-11 73.6 33 84.8
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 1.8e-11 72.8 59 61.0
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 3.1e-11 72.0 38 73.7
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 3.1e-11 72.0 37 67.6
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 7.0e-11 70.9 116 36.2
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 7.0e-11 70.9 96 40.6
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 9.1e-11 70.5 59 54.2
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 1.2e-10 70.1 29 89.7
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.6e-10 69.7 56 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 2.0e-10 69.3 43 62.8
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 2.6e-10 68.9 114 37.7
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 7.7e-10 67.4 50 60.0
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 1.0e-09 67.0 46 60.9
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 1.3e-09 66.6 41 65.9
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.3e-09 66.6 56 51.8
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.3e-09 66.6 56 51.8
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 3.8e-09 65.1 31 74.2
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 5.0e-09 64.7 32 75.0
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 8.5e-09 63.9 29 79.3
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 1.1e-08 63.5 42 61.9
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 1.5e-08 63.2 44 59.1
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 1.9e-08 62.8 40 57.5
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 2.5e-08 62.4 51 52.9
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 3.2e-08 62.0 42 59.5
Dinv40044 Davidia involucrata HOM05D007510 ORTHO05D009587 1.4e-06 56.6 32 75.0
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 3.0e-06 55.5 35 60.0


User provided reference genes

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