Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 3.1e-48 194.9 103 100.0
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 5.2e-40 167.5 103 84.5
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 6.4e-38 160.6 103 83.5
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.7e-30 136.0 102 67.6
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 1.1e-29 133.3 103 70.9
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 1.4e-29 132.9 105 70.5
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.6e-28 129.4 103 70.9
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 1.6e-28 129.4 103 70.9
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 2.7e-28 128.6 102 65.7
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 3.5e-28 128.3 105 66.7
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 6.0e-28 127.5 103 67.0
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 7.8e-28 127.1 103 68.9
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 2.3e-27 125.6 104 65.4
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 5.1e-27 124.4 103 66.0
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 5.1e-27 124.4 105 65.7
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.5e-26 122.9 105 62.9
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 3.3e-26 121.7 105 61.0
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 5.6e-26 120.9 103 58.3
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 7.3e-26 120.6 105 64.8
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.6e-25 119.4 103 62.1
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 1.6e-25 119.4 105 62.9
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.1e-25 119.0 105 67.6
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 1.1e-24 116.7 104 61.5
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 4.0e-24 114.8 105 62.9
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 8.9e-24 113.6 103 60.2
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.6e-23 112.1 105 61.9
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 3.4e-23 111.7 106 61.3
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 9.9e-23 110.2 105 61.9
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 1.3e-22 109.8 105 61.0
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.4e-22 107.5 105 60.0
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.1e-21 106.7 105 57.1
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.1e-21 106.7 105 57.1
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.4e-21 105.5 105 58.1
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.2e-20 103.2 102 59.8
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 1.7e-19 99.4 124 50.8
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 3.0e-19 98.6 102 57.8
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 8.7e-19 97.1 106 58.5
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 3.6e-17 91.7 107 57.0
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 3.1e-16 88.6 106 53.8
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 5.8e-15 84.3 107 53.3
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 5.8e-15 84.3 105 45.7
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 9.9e-15 83.6 106 53.8
Dinv26826 Davidia involucrata HOM05D003234 ORTHO05D003635 6.4e-14 80.9 53 79.2
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 8.4e-14 80.5 107 50.5
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 2.4e-13 79.0 106 51.9
Eucgr.I02454 Eucalyptus grandis HOM05D003234 ORTHO05D003635 7.8e-12 73.9 103 45.6
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 3.9e-11 71.6 107 43.0
Gohir.A12G065000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.6e-11 70.9 105 43.8
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.9e-10 69.3 64 59.4
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 2.5e-10 68.9 107 43.9
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 2.5e-10 68.9 106 40.6
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 4.3e-10 68.2 106 42.5
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.3e-10 68.2 107 43.0
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 7.3e-10 67.4 107 42.1
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 7.3e-10 67.4 107 42.1
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 7.3e-10 67.4 107 42.1
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 7.3e-10 67.4 107 42.1
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 7.3e-10 67.4 107 43.0
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 9.6e-10 67.0 107 43.0
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 9.6e-10 67.0 108 44.4
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.3e-09 66.6 107 42.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 1.3e-09 66.6 108 43.5
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 1.6e-09 66.2 107 42.1
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.6e-09 66.2 106 41.5
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 1.6e-09 66.2 109 43.1
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.6e-09 66.2 107 44.9
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.6e-09 66.2 107 43.0
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 2.1e-09 65.9 107 43.0
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 2.1e-09 65.9 108 43.5
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 2.1e-09 65.9 108 40.7
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 2.8e-09 65.5 107 40.2
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 2.8e-09 65.5 108 39.8
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 2.8e-09 65.5 107 42.1
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 2.8e-09 65.5 107 41.1
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 3.6e-09 65.1 107 41.1
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 3.6e-09 65.1 109 42.2
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.6e-09 65.1 107 41.1
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.6e-09 65.1 107 41.1
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 3.6e-09 65.1 106 41.5
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 3.6e-09 65.1 107 41.1
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 3.6e-09 65.1 107 42.1
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 3.6e-09 65.1 107 42.1
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 3.6e-09 65.1 107 42.1
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 41.1
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 41.1
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 41.1
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 41.1
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 41.1
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 42.1
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 42.1
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 4.8e-09 64.7 107 42.1
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 4.8e-09 64.7 108 41.7
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 6.2e-09 64.3 107 42.1
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 6.2e-09 64.3 107 41.1
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 40.2
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 43.0
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 41.1
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 41.1
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 40.2
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 42.1
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 41.1
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 41.1
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 8.1e-09 63.9 107 41.1
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 41.1
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 41.1
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 40.2
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 41.1
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.1e-08 63.5 108 41.7
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 41.1
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 41.1
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 1.1e-08 63.5 107 41.1
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.4e-08 63.2 53 62.3
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 41.1
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 41.1
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 42.1
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 39.3
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 1.4e-08 63.2 107 40.2
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 1.4e-08 63.2 108 41.7
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 40.2
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 40.2
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 1.8e-08 62.8 108 38.9
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 1.8e-08 62.8 109 39.4
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.8e-08 62.8 107 41.1
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 2.4e-08 62.4 108 40.7
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 2.4e-08 62.4 107 41.1
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.4e-08 62.4 109 40.4
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 3.1e-08 62.0 107 41.1
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 3.1e-08 62.0 108 40.7
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 4.0e-08 61.6 108 39.8
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 4.0e-08 61.6 107 40.2
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 39.3
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 38.3
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 5.3e-08 61.2 107 40.2
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 5.3e-08 61.2 109 38.5
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 5.3e-08 61.2 68 52.9
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 6.9e-08 60.8 107 39.3
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 6.9e-08 60.8 106 40.6
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 6.9e-08 60.8 108 42.6
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 9.0e-08 60.5 109 39.4
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 9.0e-08 60.5 107 40.2
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 1.2e-07 60.1 107 39.3
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 38.3
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.5e-07 59.7 107 41.1
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 2.0e-07 59.3 111 37.8
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 40.2
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.0e-07 59.3 108 38.0
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 2.0e-07 59.3 107 38.3
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 38.3
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 2.6e-07 58.9 107 39.3
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.4e-07 58.5 107 36.4
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 3.4e-07 58.5 108 41.7
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 3.4e-07 58.5 110 40.0
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 3.4e-07 58.5 107 40.2
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 3.4e-07 58.5 107 39.3
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 4.5e-07 58.2 106 35.8
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 5.8e-07 57.8 109 37.6
Peaxi162Scf00515g00521 Petunia axillaris HOM05D003234 ORTHO05D003635 5.8e-07 57.8 70 47.1
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 7.6e-07 57.4 130 33.8
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 9.9e-07 57.0 106 37.7
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 9.9e-07 57.0 106 42.5
QL06p045796 Quercus lobata HOM05D003234 ORTHO05D003635 1.3e-06 56.6 34 82.4
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 1.3e-06 56.6 107 38.3
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 1.7e-06 56.2 106 37.7
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.7e-06 56.2 107 37.4
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 1.7e-06 56.2 109 41.3
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 2.9e-06 55.5 109 40.4
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 3.8e-06 55.1 109 40.4
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 3.8e-06 55.1 109 40.4
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 6.4e-06 54.3 110 38.2


User provided reference genes

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