Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 1.6e-205 719.2 354 100.0
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 2.3e-180 635.6 353 87.3
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 4.1e-177 624.8 353 84.4
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 7.0e-177 624.0 353 84.1
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 3.6e-173 611.7 353 84.7
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 8.8e-172 607.1 353 83.3
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 4.9e-170 601.3 347 83.0
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 8.3e-170 600.5 345 83.8
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 1.2e-165 586.6 353 79.3
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 8.3e-162 573.9 353 77.6
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 8.6e-143 510.8 358 70.1
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 8.6e-143 510.8 358 70.1
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 1.4e-140 503.4 359 68.8
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.0e-139 499.6 356 69.7
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.6e-139 499.2 356 69.9
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.8e-138 495.4 358 69.6
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 3.8e-138 495.4 351 69.8
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 7.1e-137 491.1 357 68.1
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 5.1e-135 485.0 350 70.3
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 4.7e-133 478.4 360 67.5
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 4.0e-132 475.3 359 65.5
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 1.2e-131 473.8 364 66.5
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.5e-131 473.4 344 69.2
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 1.5e-131 473.4 357 66.1
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 2.0e-131 473.0 386 63.7
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 3.4e-131 472.2 357 65.8
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.7e-130 469.9 357 66.1
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 3.8e-130 468.8 355 66.2
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 8.4e-130 467.6 355 65.6
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 1.1e-129 467.2 356 67.1
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 3.2e-129 465.7 355 65.9
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 9.3e-129 464.2 355 65.4
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 1.6e-128 463.4 364 64.0
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 2.1e-128 463.0 353 67.7
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 1.9e-126 456.4 364 65.4
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 2.5e-126 456.1 375 62.1
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.5e-126 456.1 355 64.8
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 5.6e-126 454.9 364 65.7
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 5.6e-126 454.9 364 65.7
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 1.3e-125 453.8 361 65.1
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 2.8e-125 452.6 350 64.6
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 1.8e-124 449.9 359 64.1
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 9.0e-124 447.6 365 61.1
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 9.0e-124 447.6 365 61.1
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-122 443.7 356 64.9
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 1.1e-121 440.7 355 63.7
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 1.8e-119 433.3 353 62.9
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 1.5e-118 430.3 365 60.0
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 2.5e-118 429.5 358 60.9
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.1e-117 426.4 356 62.4
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 2.1e-117 426.4 358 60.6
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 2.8e-117 426.0 358 60.6
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 6.2e-117 424.9 367 61.0
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 8.1e-117 424.5 354 62.1
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 1.8e-116 423.3 358 59.8
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 4.5e-115 418.7 358 59.2
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 5.8e-115 418.3 362 60.8
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 9.9e-115 417.5 360 61.1
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 2.2e-114 416.4 359 59.6
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 2.2e-114 416.4 360 58.1
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 2.2e-114 416.4 352 61.1
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 4.9e-114 415.2 362 59.9
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 4.9e-114 415.2 371 58.8
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 8.4e-114 414.5 364 56.9
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.9e-113 413.3 358 58.7
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 2.4e-113 412.9 336 63.4
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 3.2e-113 412.5 363 60.9
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 5.5e-113 411.8 353 61.8
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 5.5e-113 411.8 362 59.9
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 1.2e-112 410.6 360 58.6
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 1.3e-111 407.1 353 60.6
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 3.0e-111 406.0 369 56.6
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 3.9e-111 405.6 363 58.7
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 3.9e-111 405.6 331 63.1
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 3.3e-110 402.5 358 59.5
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 5.6e-110 401.7 357 60.5
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 7.4e-110 401.4 370 57.6
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 3.7e-109 399.1 347 58.2
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 1.4e-108 397.1 381 56.2
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 1.8e-108 396.7 363 56.2
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 5.3e-108 395.2 353 56.7
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 2.6e-107 392.9 337 58.2
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 4.5e-107 392.1 352 59.1
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 4.2e-105 385.6 346 55.8
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 1.2e-104 384.0 336 61.3
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 1.6e-104 383.6 336 61.3
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 2.3e-103 379.8 336 60.4
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 3.0e-103 379.4 237 78.9
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 3.9e-103 379.0 364 54.7
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 6.7e-103 378.3 361 55.7
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 3.7e-101 372.5 335 60.0
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 2.9e-98 362.8 364 54.4
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 1.9e-97 360.1 337 56.7
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 2.5e-94 349.7 360 53.1
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 4.7e-88 328.9 264 61.4
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 5.7e-86 322.0 235 67.7
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 2.2e-85 320.1 240 64.2
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 3.4e-83 312.8 348 50.3
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 5.7e-78 295.4 356 48.3
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 5.3e-76 288.9 284 54.6
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 2.6e-70 270.0 354 42.7
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 1.1e-68 264.6 213 62.4
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 9.1e-68 261.5 211 64.0
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 9.1e-68 261.5 215 60.9
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.5e-67 259.2 211 63.0
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 5.9e-67 258.8 167 71.9
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.2e-66 256.9 211 62.6
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 1.4e-63 247.7 372 39.5
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 6.8e-63 245.4 318 45.9
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 2.0e-54 217.2 211 55.9
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 5.0e-50 202.6 150 67.3
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 7.3e-49 198.7 235 51.1
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 8.3e-45 185.3 376 32.4
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.0e-42 178.3 210 47.6
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.9e-42 176.4 122 71.3
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 3.9e-42 176.4 142 57.0
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 2.5e-33 147.1 168 44.0
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.4e-23 114.8 63 84.1
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.7e-21 107.8 63 77.8
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.1e-17 95.1 63 73.0
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 1.1e-12 78.6 157 36.9
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 1.2e-11 75.1 158 31.6
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 3.5e-11 73.6 52 61.5
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 1.0e-10 72.0 86 40.7
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 3.0e-10 70.5 53 58.5
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 3.0e-10 70.5 53 58.5
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 3.0e-10 70.5 53 58.5
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 5.1e-10 69.7 52 59.6
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 5.3e-07 59.7 54 53.7
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 1.5e-06 58.2 49 53.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 1.5e-06 58.2 49 53.1
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 1.5e-06 58.2 49 53.1
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 1.5e-06 58.2 49 53.1


User provided reference genes

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