Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023858 Lotus japonicus HOM05D020041 ORTHO05D030020 2.4e-193 678.7 353 100.0
Lj4g0014650 Lotus japonicus HOM05D020041 ORTHO05D030020 7.9e-104 381.3 353 63.7
Lj4g0008355 Lotus japonicus HOM05D020041 ORTHO05D030020 1.9e-97 360.1 300 68.0
Lj5g0020675 Lotus japonicus HOM05D020041 ORTHO05D030020 5.0e-90 335.5 193 91.7
LjContig00155g0001945 Lotus japonicus HOM05D000353 ORTHO05D000174 7.0e-28 129.0 326 29.1
Medtr6g445520 Medicago truncatula HOM05D000353 ORTHO05D000174 7.8e-27 125.6 242 34.7
Medtr3g056270 Medicago truncatula HOM05D000353 ORTHO05D000174 9.5e-25 118.6 234 32.9
Medtr4g036240 Medicago truncatula HOM05D000353 ORTHO05D000174 9.5e-25 118.6 234 32.9
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 9.5e-25 118.6 247 33.2
TPR.G34060 Trifolium pratense HOM05D011527 ORTHO05D009491 1.2e-24 118.2 227 35.2
Medtr2g048560 Medicago truncatula HOM05D000353 ORTHO05D000174 2.3e-23 114.0 226 28.3
Medtr2g008650 Medicago truncatula HOM05D000353 ORTHO05D000174 1.4e-20 104.8 226 30.1
Medtr8g479260 Medicago truncatula HOM05D000353 ORTHO05D000174 1.4e-20 104.8 226 30.1
TPR.G34472 Trifolium pratense HOM05D011524 ORTHO05D009491 1.9e-20 104.4 219 31.1
Medtr8g062030 Medicago truncatula HOM05D000353 ORTHO05D000174 2.4e-20 104.0 368 27.7
Phvul.005G096800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 2.4e-20 104.0 223 30.9
Medtr5g078250 Medicago truncatula HOM05D000353 ORTHO05D000174 4.1e-20 103.2 224 29.9
Phvul.001G105000 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 5.4e-20 102.8 216 29.6
Phvul.001G109800 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 9.2e-20 102.1 211 32.7
TPR.G26714 Trifolium pratense HOM05D011524 ORTHO05D009491 9.2e-20 102.1 220 31.4
TPR.G17919 Trifolium pratense HOM05D011527 ORTHO05D009491 1.2e-19 101.7 220 31.4
LjContig00141g0027033 Lotus japonicus HOM05D007499 ORTHO05D000174 6.0e-19 99.4 229 30.1
arahy.Tifrunner.gnm1.ann1.Y6YSHD Arachis hypogaea HOM05D000353 ORTHO05D000174 7.8e-19 99.0 348 26.1
TPR.G19823 Trifolium pratense HOM05D011527 ORTHO05D009491 7.8e-19 99.0 379 25.9
Lj4g0000768 Lotus japonicus HOM05D007499 ORTHO05D000174 1.7e-18 97.8 228 30.7
Lj1g0016702 Lotus japonicus HOM05D007499 ORTHO05D000174 3.0e-18 97.1 323 26.6
arahy.Tifrunner.gnm1.ann1.CPRZ31 Arachis hypogaea HOM05D000353 ORTHO05D000174 3.9e-18 96.7 347 25.9
arahy.Tifrunner.gnm1.ann1.J9NJUF Arachis hypogaea HOM05D000353 ORTHO05D000174 5.1e-18 96.3 347 25.9
arahy.Tifrunner.gnm1.ann1.IYP2GG Arachis hypogaea HOM05D000353 ORTHO05D000174 6.6e-18 95.9 347 25.9
arahy.Tifrunner.gnm1.ann1.LSFF47 Arachis hypogaea HOM05D000353 ORTHO05D000174 8.6e-18 95.5 347 25.9
Lj2g0010324 Lotus japonicus HOM05D031116 ORTHO05D009491 8.6e-18 95.5 210 30.0
arahy.Tifrunner.gnm1.ann1.AKH4BK Arachis hypogaea HOM05D000353 ORTHO05D000174 1.9e-17 94.4 347 25.6
Phvul.007G143500 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 2.5e-17 94.0 225 29.8
Lj3g0013581 Lotus japonicus HOM05D007499 ORTHO05D000174 9.5e-17 92.0 233 27.9
Phvul.008G122133 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 1.2e-16 91.7 223 30.0
Lj6g0022193 Lotus japonicus HOM05D010643 ORTHO05D013332 2.8e-16 90.5 200 28.0
arahy.Tifrunner.gnm1.ann1.SFEY24 Arachis hypogaea HOM05D000353 ORTHO05D000174 3.6e-16 90.1 225 29.8
Lj5g0012270 Lotus japonicus HOM05D007499 ORTHO05D000174 3.6e-16 90.1 232 27.6
Phvul.007G155600 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 8.1e-16 89.0 188 32.4
arahy.Tifrunner.gnm1.ann1.C28E5T Arachis hypogaea HOM05D010000 ORTHO05D009491 1.4e-15 88.2 301 26.6
Lj6g0015228 Lotus japonicus HOM05D007499 ORTHO05D000174 1.8e-15 87.8 321 25.5
Phvul.L003637 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 1.8e-15 87.8 215 31.2
TPR.G36881 Trifolium pratense HOM05D011524 ORTHO05D009491 1.8e-15 87.8 363 24.8
TPR.G35040 Trifolium pratense HOM05D011524 ORTHO05D009491 3.1e-15 87.0 219 28.8
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 1.2e-14 85.1 315 26.0
TPR.G30051 Trifolium pratense HOM05D000023 ORTHO05D009491 1.2e-14 85.1 225 30.7
Lj2g0011029 Lotus japonicus HOM05D000353 ORTHO05D000174 2.0e-14 84.3 98 44.9
Phvul.010G059600 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 2.0e-14 84.3 193 30.1
TPR.G27579 Trifolium pratense HOM05D007499 ORTHO05D009491 3.4e-14 83.6 272 24.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 4.4e-14 83.2 247 26.7
Phvul.006G191400 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 4.4e-14 83.2 195 31.8
Phvul.006G016100 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 7.6e-14 82.4 206 30.1
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 1.7e-13 81.3 227 26.4
TPR.G39726 Trifolium pratense HOM05D007499 ORTHO05D009491 1.7e-13 81.3 224 26.3
Glyma.05G083400 Glycine max HOM05D000353 ORTHO05D000174 2.9e-13 80.5 196 32.1
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 1.1e-12 78.6 355 23.4
Lj1g0004030 Lotus japonicus HOM05D000353 ORTHO05D000174 1.1e-12 78.6 177 31.1
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.9e-12 77.8 261 22.2
Lj3g0013474 Lotus japonicus HOM05D000353 ORTHO05D000174 9.2e-12 75.5 356 23.6
Medtr5g057125 Medicago truncatula HOM05D000353 ORTHO05D002376 9.2e-12 75.5 232 25.9
Medtr0042s0170 Medicago truncatula HOM05D007499 ORTHO05D009491 1.2e-11 75.1 334 25.7
BcaB08g34954 Brassica carinata HOM05D000353 ORTHO05D000174 3.5e-11 73.6 248 25.4
TPR.G30682 Trifolium pratense HOM05D000096 ORTHO05D000045 6.0e-11 72.8 199 27.1
Phvul.007G129300 Phaseolus vulgaris HOM05D000353 ORTHO05D009491 7.8e-11 72.4 174 29.9
TPR.G7855 Trifolium pratense HOM05D000096 ORTHO05D000045 7.8e-11 72.4 188 28.2
arahy.Tifrunner.gnm1.ann1.HP5C5B Arachis hypogaea HOM05D012160 ORTHO05D009491 1.0e-10 72.0 102 33.3
TPR.G38721 Trifolium pratense HOM05D000096 ORTHO05D000045 3.9e-10 70.1 279 24.7
Medtr1g075850 Medicago truncatula HOM05D000353 ORTHO05D000174 5.1e-10 69.7 255 24.7
TPR.G16657 Trifolium pratense HOM05D011524 ORTHO05D009491 8.7e-10 68.9 193 30.1
Lj1g0002106 Lotus japonicus HOM05D024106 ORTHO05D002376 1.1e-09 68.6 255 23.9
QL07p007200 Quercus lobata HOM05D000096 ORTHO05D000045 1.9e-09 67.8 173 26.6
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 2.5e-09 67.4 325 25.5
Thhalv10029348m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 2.5e-09 67.4 246 22.0
LjContig00081g0005726 Lotus japonicus HOM05D007499 ORTHO05D000174 2.5e-09 67.4 169 30.8
LjContig00357g0026360 Lotus japonicus HOM05D007499 ORTHO05D009491 2.5e-09 67.4 169 30.8
QL01p044581 Quercus lobata HOM05D002907 ORTHO05D005554 2.5e-09 67.4 187 25.7
ECA240G4108 Erigeron canadensis HOM05D003964 ORTHO05D002376 4.3e-09 66.6 263 22.4
Lj6g0004966 Lotus japonicus HOM05D011527 ORTHO05D009491 4.3e-09 66.6 190 28.9
LjContig00564g0005268 Lotus japonicus HOM05D007499 ORTHO05D010522 4.3e-09 66.6 230 26.5
Medtr1g492690 Medicago truncatula HOM05D002441 ORTHO05D022927 4.3e-09 66.6 295 24.4
Lj5g0011370 Lotus japonicus HOM05D007499 ORTHO05D010522 5.6e-09 66.2 230 26.5
ECA240G2532 Erigeron canadensis HOM05D003964 ORTHO05D000174 7.3e-09 65.9 281 23.1
LjContig00141g0021501 Lotus japonicus HOM05D024106 ORTHO05D002376 7.3e-09 65.9 217 23.5
Medtr1g115520 Medicago truncatula HOM05D002441 ORTHO05D002376 1.2e-08 65.1 119 35.3
TPR.G20476 Trifolium pratense HOM05D011524 ORTHO05D009491 1.2e-08 65.1 164 26.2
TPR.G27599 Trifolium pratense HOM05D007499 ORTHO05D009491 1.6e-08 64.7 205 26.3
ECA232G3959 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.1e-08 64.3 230 24.8
ECA240G1473 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.1e-08 64.3 248 24.2
BolC4t24212H Brassica oleracea HOM05D000353 ORTHO05D000174 2.8e-08 63.9 176 24.4
QL01p044591 Quercus lobata HOM05D002907 ORTHO05D005554 2.8e-08 63.9 183 25.1
TPR.G9076 Trifolium pratense HOM05D000096 ORTHO05D000045 3.6e-08 63.5 186 27.4
Lj1g0003435 Lotus japonicus HOM05D007499 ORTHO05D000174 4.7e-08 63.2 163 30.7
TPR.G14905 Trifolium pratense HOM05D007499 ORTHO05D009491 4.7e-08 63.2 185 28.6
TPR.G16048 Trifolium pratense HOM05D001993 ORTHO05D004040 4.7e-08 63.2 176 29.0
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 6.2e-08 62.8 322 23.3
arahy.Tifrunner.gnm1.ann1.2B1C55 Arachis hypogaea HOM05D010000 ORTHO05D009491 8.1e-08 62.4 297 25.9
arahy.Tifrunner.gnm1.ann1.39QWAJ Arachis hypogaea HOM05D008664 ORTHO05D000174 8.1e-08 62.4 238 24.4
C02p26060 Brassica napus HOM05D000353 ORTHO05D000174 8.1e-08 62.4 327 25.1
Thhalv10000499m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 8.1e-08 62.4 246 20.7
Phvul.005G044800 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 8.1e-08 62.4 106 37.7
Phvul.009G015800 Phaseolus vulgaris HOM05D011527 ORTHO05D009491 8.1e-08 62.4 172 27.9
Lsat_1_v5_gn_3_140020 Lactuca sativa HOM05D007823 ORTHO05D000174 1.1e-07 62.0 195 26.2
BcaC09g51435 Brassica carinata HOM05D000353 ORTHO05D000174 1.4e-07 61.6 354 22.0
BolC1t01288H Brassica oleracea HOM05D000353 ORTHO05D000174 1.4e-07 61.6 354 22.0
ECA248G2532 Erigeron canadensis HOM05D003964 ORTHO05D000174 1.8e-07 61.2 282 22.7
Lj5g0027118 Lotus japonicus HOM05D007499 ORTHO05D010522 1.8e-07 61.2 358 24.9
BcaC01g00750 Brassica carinata HOM05D000353 ORTHO05D000174 2.4e-07 60.8 229 26.6
TPR.G16855 Trifolium pratense HOM05D007499 ORTHO05D009491 2.4e-07 60.8 171 23.4
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 2.4e-07 60.8 296 26.0
C03p18660 Brassica napus HOM05D000353 ORTHO05D000174 3.1e-07 60.5 240 24.2
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-07 60.5 148 26.4
Phvul.005G095200 Phaseolus vulgaris HOM05D000353 ORTHO05D000174 3.1e-07 60.5 188 27.7
A02p32050 Brassica napus HOM05D000353 ORTHO05D000174 4.0e-07 60.1 258 24.0
A09p11230 Brassica napus HOM05D000353 ORTHO05D000174 4.0e-07 60.1 310 26.1
BraA02t08216Z Brassica rapa HOM05D000353 ORTHO05D000174 4.0e-07 60.1 258 24.0
ECA238G2764 Erigeron canadensis HOM05D003964 ORTHO05D002376 4.0e-07 60.1 216 23.6
C02p33390 Brassica napus HOM05D000353 ORTHO05D015401 5.2e-07 59.7 302 23.8
Thhalv10002301m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 5.2e-07 59.7 248 21.0
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 6.9e-07 59.3 229 23.6
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 6.9e-07 59.3 229 23.6
arahy.Tifrunner.gnm1.ann1.W2LWD3 Arachis hypogaea HOM05D008664 ORTHO05D000174 6.9e-07 59.3 229 23.6
TPR.G8849 Trifolium pratense HOM05D007499 ORTHO05D009491 6.9e-07 59.3 183 26.2
arahy.Tifrunner.gnm1.ann1.U14C6K Arachis hypogaea HOM05D008664 ORTHO05D000174 9.0e-07 58.9 229 22.7
BcaB05g22552 Brassica carinata HOM05D000353 ORTHO05D000174 9.0e-07 58.9 244 23.0
BolC5t33651H Brassica oleracea HOM05D000353 ORTHO05D000174 9.0e-07 58.9 243 23.0
Lj3g0027323 Lotus japonicus HOM05D024106 ORTHO05D002376 9.0e-07 58.9 247 21.5
Medtr7g032940 Medicago truncatula HOM05D010809 ORTHO05D009491 9.0e-07 58.9 76 43.4
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 9.0e-07 58.9 299 25.8
TPR.G8670 Trifolium pratense HOM05D007499 ORTHO05D009491 9.0e-07 58.9 212 24.5
ECA246G2956 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.2e-06 58.5 245 21.6
Medtr6g039240 Medicago truncatula HOM05D007848 ORTHO05D000174 1.2e-06 58.5 86 37.2
C01p17330 Brassica napus HOM05D000353 ORTHO05D000174 1.5e-06 58.2 252 23.8
ECA236G2182 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.5e-06 58.2 285 22.5
HanXRQChr01g0021371 Helianthus annuus HOM05D003964 ORTHO05D000174 1.5e-06 58.2 253 20.2
TPR.G26497 Trifolium pratense HOM05D007499 ORTHO05D009491 1.5e-06 58.2 158 29.1
arahy.Tifrunner.gnm1.ann1.GFA6QK Arachis hypogaea HOM05D007499 ORTHO05D009491 2.0e-06 57.8 199 29.1
arahy.Tifrunner.gnm1.ann1.Y0MAT2 Arachis hypogaea HOM05D002441 ORTHO05D002376 2.0e-06 57.8 320 23.4
A03p66100 Brassica napus HOM05D000353 ORTHO05D000174 2.0e-06 57.8 249 24.1
A05p24550 Brassica napus HOM05D000353 ORTHO05D000174 2.0e-06 57.8 249 24.1
Lj4g0008637 Lotus japonicus HOM05D007499 ORTHO05D010522 2.0e-06 57.8 96 37.5
Medtr0048s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 2.0e-06 57.8 188 25.5
arahy.Tifrunner.gnm1.ann1.AJVM0N Arachis hypogaea HOM05D008664 ORTHO05D000174 2.6e-06 57.4 229 22.3
C05p49080 Brassica napus HOM05D000353 ORTHO05D000174 2.6e-06 57.4 243 22.6
BraA05t22072Z Brassica rapa HOM05D000353 ORTHO05D000174 2.6e-06 57.4 243 23.0
Medtr1g085690 Medicago truncatula HOM05D007848 ORTHO05D000174 2.6e-06 57.4 78 39.7
Medtr6g013455 Medicago truncatula HOM05D007848 ORTHO05D000174 2.6e-06 57.4 78 39.7
Medtr8g463820 Medicago truncatula HOM05D007848 ORTHO05D000174 2.6e-06 57.4 93 36.6
TPR.G14684 Trifolium pratense HOM05D007499 ORTHO05D000174 3.4e-06 57.0 205 24.4
BcaB06g28316 Brassica carinata HOM05D000353 ORTHO05D000174 4.4e-06 56.6 108 32.4
C09p27100 Brassica napus HOM05D000353 ORTHO05D000174 4.4e-06 56.6 240 23.8
ECA233G0025 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.4e-06 56.6 227 24.2
ECA234G0749 Erigeron canadensis HOM05D003964 ORTHO05D002376 4.4e-06 56.6 327 21.1
ECA248G1544 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.4e-06 56.6 234 20.9
Medtr3g081610 Medicago truncatula HOM05D007499 ORTHO05D009491 4.4e-06 56.6 160 27.5
arahy.Tifrunner.gnm1.ann1.UHX6VS Arachis hypogaea HOM05D010809 ORTHO05D009978 5.8e-06 56.2 205 26.8
C06p15640 Brassica napus HOM05D000353 ORTHO05D000174 5.8e-06 56.2 241 23.2
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 5.8e-06 56.2 249 24.1
arahy.Tifrunner.gnm1.ann1.14A9EJ Arachis hypogaea HOM05D010000 ORTHO05D009491 7.6e-06 55.8 117 29.9
arahy.Tifrunner.gnm1.ann1.K0L2P8 Arachis hypogaea HOM05D010809 ORTHO05D009978 7.6e-06 55.8 236 26.3
BcaB02g11010 Brassica carinata HOM05D000353 ORTHO05D000174 7.6e-06 55.8 240 23.8
A04p27050 Brassica napus HOM05D000353 ORTHO05D000174 7.6e-06 55.8 274 21.2
C07p16110 Brassica napus HOM05D009574 ORTHO05D012637 7.6e-06 55.8 229 20.5
BraA08t32474Z Brassica rapa HOM05D000353 ORTHO05D000174 7.6e-06 55.8 274 21.2
Medtr1g094230 Medicago truncatula HOM05D007848 ORTHO05D000174 7.6e-06 55.8 86 34.9
arahy.Tifrunner.gnm1.ann1.40YIIT Arachis hypogaea HOM05D008664 ORTHO05D000174 9.9e-06 55.5 229 24.0
arahy.Tifrunner.gnm1.ann1.CT1CGZ Arachis hypogaea HOM05D007499 ORTHO05D009491 9.9e-06 55.5 199 28.6
arahy.Tifrunner.gnm1.ann1.G6AKQD Arachis hypogaea HOM05D010000 ORTHO05D009491 9.9e-06 55.5 279 24.0
Lj3g0020532 Lotus japonicus HOM05D031098 ORTHO05D015701 9.9e-06 55.5 212 27.4
Medtr7g051400 Medicago truncatula HOM05D008036 ORTHO05D000174 9.9e-06 55.5 284 23.6


User provided reference genes

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