Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 0.0e+00 1387.9 679 100.0
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 3.5e-278 961.4 697 68.9
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 2.4e-274 948.7 684 69.4
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 1.2e-273 946.4 699 67.4
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 2.0e-273 945.7 684 68.6
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 9.7e-268 926.8 682 68.0
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 8.2e-259 897.1 677 66.2
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 9.4e-247 857.1 674 65.4
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 3.1e-226 788.9 684 60.8
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 4.3e-215 751.9 663 60.0
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 5.8e-172 608.6 686 48.4
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.2e-164 584.3 688 45.3
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 5.3e-157 558.9 686 44.5
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 9.1e-149 531.6 691 41.1
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 3.4e-148 529.6 718 42.2
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 4.8e-142 509.2 691 41.8
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.4e-141 507.7 691 41.8
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 9.1e-141 505.0 681 42.0
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 1.5e-140 504.2 676 41.3
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.7e-140 501.9 687 41.0
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.3e-139 501.1 693 40.7
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 7.2e-138 495.4 612 43.1
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 9.4e-138 495.0 687 41.3
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 9.4e-138 495.0 682 40.2
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.0e-136 491.5 675 41.3
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.8e-136 490.7 716 39.8
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.3e-136 490.3 721 39.8
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.3e-135 486.5 660 41.8
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 1.3e-134 484.6 709 40.2
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 1.1e-133 481.5 392 62.8
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.5e-130 471.1 680 40.1
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 2.5e-130 470.3 696 39.7
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 1.2e-127 461.5 697 39.0
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 1.5e-127 461.1 714 38.7
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 3.7e-126 456.4 677 40.2
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 3.1e-125 453.4 672 39.9
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 3.1e-125 453.4 689 39.3
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.7e-124 450.3 669 39.9
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.2e-123 447.2 672 39.7
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.9e-122 444.1 684 39.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 1.3e-118 431.4 679 39.0
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 7.0e-117 425.6 667 37.9
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 7.7e-116 422.2 718 38.0
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.3e-115 421.4 687 37.6
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 1.3e-115 421.4 684 38.0
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 1.0e-112 411.8 683 35.7
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 4.0e-112 409.8 620 38.1
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 9.8e-111 405.2 678 37.3
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 6.4e-110 402.5 666 37.1
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 8.3e-110 402.1 679 37.1
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 1.6e-108 397.9 659 37.2
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.0e-108 397.5 682 35.3
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 7.8e-108 395.6 664 36.7
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 2.3e-107 394.0 533 42.8
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 6.6e-107 392.5 679 35.8
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 2.5e-106 390.6 666 36.6
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 4.3e-106 389.8 642 37.1
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 5.6e-106 389.4 569 39.5
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.0e-104 385.2 684 35.5
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.0e-104 385.2 661 36.5
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 1.0e-104 385.2 685 34.7
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.8e-104 384.4 638 37.6
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 5.8e-103 379.4 663 35.9
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.3e-102 378.3 631 37.1
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 1.7e-102 377.9 680 35.1
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 3.7e-102 376.7 731 34.7
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 6.4e-102 375.9 695 35.8
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 8.3e-102 375.6 568 40.0
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 3.2e-101 373.6 648 36.3
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 7.8e-100 369.0 682 34.2
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 7.8e-100 369.0 596 36.7
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 3.3e-98 363.6 641 36.0
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 4.3e-98 363.2 671 34.1
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.2e-97 361.7 693 34.5
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 4.0e-96 356.7 697 34.0
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 5.2e-96 356.3 659 34.9
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 7.5e-95 352.4 681 33.2
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 2.9e-94 350.5 505 39.8
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.1e-93 348.6 713 34.1
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 5.4e-93 346.3 587 35.9
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 7.1e-93 345.9 665 36.2
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 2.7e-92 344.0 593 35.1
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 3.5e-92 343.6 603 36.3
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 7.8e-92 342.4 697 32.6
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 5.1e-91 339.7 687 35.1
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 2.8e-89 334.0 552 36.4
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.1e-85 322.0 619 34.2
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 5.2e-80 303.1 637 33.3
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 2.7e-76 290.8 413 38.5
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 3.3e-74 283.9 434 36.6
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 9.6e-74 282.3 436 39.7
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 2.8e-73 280.8 531 34.3
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.0e-67 262.3 666 29.1
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.3e-67 261.9 368 41.8
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.5e-66 258.5 699 30.2
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.5e-66 258.5 699 30.2
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 4.2e-61 240.4 738 29.5
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 4.0e-56 223.8 424 35.8
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.0e-52 209.9 317 36.9
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-44 185.7 193 49.7
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 3.0e-43 181.0 298 37.9
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 6.1e-36 156.8 371 32.3
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 4.2e-29 134.0 158 45.6
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 2.8e-25 121.3 191 36.1
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 8.2e-25 119.8 144 45.1
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 8.0e-20 103.2 472 25.4
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.7e-18 96.3 76 56.6
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 9.7e-18 96.3 76 56.6
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.3e-17 95.9 91 52.7
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.2e-14 85.1 384 23.7
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 6.5e-14 83.6 484 23.1
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 2.2e-09 68.6 48 66.7
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.4e-08 65.9 218 25.7
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 7.0e-08 63.5 243 24.3
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.7e-07 61.6 89 40.4
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 4.5e-07 60.8 171 28.7
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 1.0e-06 59.7 91 40.7
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.2e-06 58.5 135 30.4
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 5.0e-06 57.4 37 75.7


User provided reference genes

Program Settings