Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 6.9e-116 420.6 207 100.0
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 8.9e-47 191.0 216 52.8
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 2.9e-42 176.0 221 50.7
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 1.0e-39 167.5 218 54.6
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 5.2e-39 165.2 222 52.3
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 8.9e-39 164.5 236 49.6
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 4.9e-37 158.7 222 51.8
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 7.0e-36 154.8 220 50.5
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.1e-31 141.0 217 44.2
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 4.4e-30 135.6 244 41.8
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.7e-29 133.7 221 43.0
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 5.4e-28 128.6 220 41.4
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.7e-27 126.3 263 34.6
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 4.6e-27 125.6 232 40.1
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 7.8e-27 124.8 212 42.9
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 7.8e-27 124.8 236 39.0
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 7.8e-27 124.8 245 39.2
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.0e-26 124.4 261 34.1
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 1.0e-26 124.4 257 38.5
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.7e-26 123.6 212 42.5
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.7e-26 123.6 250 36.8
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.3e-26 123.2 215 40.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 2.3e-26 123.2 249 40.2
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.3e-26 123.2 212 42.5
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 3.0e-26 122.9 261 34.1
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.1e-25 120.9 246 34.6
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.9e-25 120.2 223 37.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 2.5e-25 119.8 210 39.5
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 2.5e-25 119.8 244 36.1
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.3e-25 119.4 261 37.2
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 4.3e-25 119.0 219 40.6
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 9.5e-25 117.9 217 40.6
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 9.5e-25 117.9 224 41.1
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 9.5e-25 117.9 245 35.1
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 1.2e-24 117.5 257 34.6
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 2.1e-24 116.7 234 38.5
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.8e-24 116.3 254 37.0
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.8e-24 116.3 229 37.1
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 3.6e-24 115.9 227 39.6
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 4.7e-24 115.5 216 39.4
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 6.2e-24 115.2 234 38.0
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 8.1e-24 114.8 225 39.1
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 8.1e-24 114.8 255 35.3
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 1.4e-23 114.0 221 38.5
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.4e-23 114.0 237 40.1
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.4e-23 114.0 246 37.8
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.4e-23 114.0 244 36.5
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 3.1e-23 112.8 223 39.0
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.1e-23 112.8 218 37.2
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 3.1e-23 112.8 250 36.8
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 4.0e-23 112.5 262 34.7
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 5.2e-23 112.1 214 37.9
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 6.8e-23 111.7 213 38.5
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.2e-22 110.9 242 35.5
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.5e-22 110.5 218 36.7
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.0e-22 110.2 249 37.8
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.6e-22 109.8 220 37.3
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 5.8e-22 108.6 259 33.2
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 5.8e-22 108.6 241 34.9
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.8e-22 108.6 247 37.2
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.8e-22 108.6 247 37.2
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 7.5e-22 108.2 258 33.7
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 7.5e-22 108.2 245 35.5
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 9.9e-22 107.8 217 36.9
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 9.9e-22 107.8 238 35.7
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 9.9e-22 107.8 216 38.0
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.7e-21 107.1 220 36.8
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.2e-21 106.7 214 36.9
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.9e-21 106.3 243 38.3
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.9e-21 106.3 246 33.7
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.9e-21 106.3 249 36.1
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 4.9e-21 105.5 246 35.8
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 8.3e-21 104.8 250 34.4
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.1e-20 104.4 246 35.4
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.4e-20 104.0 249 35.3
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 2.4e-20 103.2 226 37.2
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 2.4e-20 103.2 231 38.5
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.4e-20 103.2 256 35.2
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 3.2e-20 102.8 248 34.3
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.4e-20 102.1 216 37.5
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 9.2e-20 101.3 251 33.9
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 9.2e-20 101.3 238 34.5
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 9.2e-20 101.3 248 35.5
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.6e-19 100.5 225 36.0
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.7e-19 99.8 240 37.5
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 3.5e-19 99.4 247 34.0
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 4.6e-19 99.0 218 37.2
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 4.6e-19 99.0 218 37.2
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 4.6e-19 99.0 218 37.2
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.3e-18 97.4 223 32.7
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.3e-18 96.7 214 37.4
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.3e-18 96.7 229 34.1
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.0e-18 96.3 250 32.8
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.9e-18 95.9 249 33.3
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.1e-17 94.4 251 32.3
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 1.5e-17 94.0 240 35.0
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.3e-17 92.8 262 31.3
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.3e-17 92.8 244 31.6
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 5.6e-17 92.0 244 31.6
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 1.6e-16 90.5 252 34.9
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.6e-16 90.5 248 35.1
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.1e-16 90.1 247 32.4
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.6e-16 89.4 247 31.2
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 3.6e-16 89.4 247 33.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.7e-16 89.0 239 31.0
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 4.7e-16 89.0 240 31.2
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 6.2e-16 88.6 252 31.3
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.4e-15 86.7 247 32.0
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 5.2e-15 85.5 206 34.5
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 5.2e-15 85.5 184 32.6
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 1.5e-14 84.0 220 35.5
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.0e-14 83.6 231 31.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 5.8e-14 82.0 250 31.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 5.8e-14 82.0 216 34.3
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 5.8e-14 82.0 230 31.3
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 3.8e-13 79.3 226 30.1
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 1.4e-12 77.4 195 33.3
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.2e-11 74.3 233 28.8
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.7e-11 73.2 185 33.5
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 8.7e-10 68.2 242 29.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.1e-09 67.8 240 30.4
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 9.6e-09 64.7 239 27.2
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 1.4e-07 60.8 247 29.1
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.8e-07 60.5 170 29.4


User provided reference genes

Program Settings