Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 4.7e-222 774.2 397 100.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.5e-175 619.0 373 81.0
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.4e-170 603.2 325 86.8
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 4.6e-169 598.2 318 88.7
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 2.3e-168 595.9 317 89.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 6.7e-168 594.3 368 78.5
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 2.1e-166 589.3 317 88.0
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 2.8e-166 589.0 339 83.2
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 8.1e-166 587.4 317 87.7
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.8e-165 586.3 323 87.0
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 5.5e-162 574.7 315 85.4
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 9.0e-157 557.4 317 82.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 9.3e-154 547.4 316 80.7
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 6.7e-152 541.2 318 79.6
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 1.3e-150 537.0 316 79.4
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 6.3e-150 534.6 319 78.4
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.4e-149 533.5 316 79.4
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 4.1e-149 531.9 319 77.1
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 4.1e-149 531.9 319 78.7
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.9e-147 525.8 322 77.6
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 3.8e-147 525.4 316 77.5
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 6.5e-147 524.6 319 78.1
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.9e-146 523.1 316 75.6
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.2e-146 522.3 318 77.0
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 9.4e-146 520.8 316 75.9
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.6e-145 520.0 319 75.9
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 4.6e-145 518.5 303 79.9
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.4e-144 516.9 319 75.9
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 1.8e-144 516.5 371 68.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.0e-144 515.8 323 76.2
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 3.9e-144 515.4 331 73.4
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.7e-144 514.6 319 75.5
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 8.8e-144 514.2 318 75.5
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.1e-143 513.8 321 75.4
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.5e-143 512.7 316 75.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 4.3e-143 511.9 322 75.8
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.8e-142 509.2 316 75.3
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 6.3e-142 508.1 315 74.9
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 6.3e-142 508.1 322 73.9
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.1e-141 507.3 331 71.9
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 1.1e-141 507.3 316 73.7
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.1e-141 507.3 319 75.2
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.4e-141 506.1 322 73.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.4e-141 506.1 322 73.9
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.4e-141 506.1 323 73.7
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 3.1e-141 505.8 322 73.3
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 3.1e-141 505.8 317 75.1
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.2e-140 503.8 315 75.6
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-140 503.8 315 75.6
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.2e-140 503.8 321 73.8
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 7.7e-140 501.1 323 73.1
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 7.7e-140 501.1 325 72.0
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.0e-139 500.7 317 73.8
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 1.3e-139 500.4 319 73.4
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.7e-139 500.0 315 74.9
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 2.9e-139 499.2 316 73.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 8.5e-139 497.7 321 73.5
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.2e-138 495.7 316 72.2
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.2e-137 493.8 320 73.4
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.1e-137 493.0 319 72.7
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 2.7e-137 492.7 316 71.8
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 4.7e-137 491.9 318 70.8
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 6.1e-137 491.5 319 72.4
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 6.1e-137 491.5 316 72.8
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.9e-137 491.1 315 72.7
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 7.9e-137 491.1 320 69.7
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.8e-136 490.0 319 69.3
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 3.0e-136 489.2 319 72.1
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 3.9e-136 488.8 317 72.6
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 5.1e-136 488.4 318 71.7
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 8.8e-136 487.6 317 72.6
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 1.5e-135 486.9 319 71.8
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.5e-135 486.9 320 71.2
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.5e-135 486.9 316 71.8
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.6e-135 486.1 368 64.1
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 3.3e-135 485.7 316 73.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 4.4e-135 485.3 315 72.7
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 4.4e-135 485.3 319 69.0
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.4e-135 485.3 316 71.2
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.7e-134 483.4 315 69.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 2.2e-134 483.0 318 70.4
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 2.8e-134 482.6 316 71.5
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.8e-134 481.9 316 73.1
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 4.8e-134 481.9 320 70.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 6.3e-134 481.5 317 69.1
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.2e-134 481.1 313 71.2
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.1e-133 480.7 315 69.2
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.8e-133 479.9 315 70.8
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.1e-133 479.2 319 71.8
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.2e-132 477.2 322 69.6
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 2.0e-132 476.5 315 70.5
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.6e-132 476.1 318 70.1
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 3.5e-132 475.7 316 70.6
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.7e-131 473.4 316 70.6
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.9e-131 472.6 316 68.4
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 2.5e-130 469.5 317 69.7
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 3.2e-130 469.2 316 68.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 3.2e-130 469.2 319 68.7
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.6e-129 466.8 317 69.7
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.6e-129 465.7 315 67.9
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.3e-128 463.0 319 67.7
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 3.9e-128 462.2 318 68.2
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 8.8e-128 461.1 323 66.9
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 1.1e-127 460.7 318 66.4
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 7.4e-127 458.0 317 69.4
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 9.7e-127 457.6 319 67.7
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.3e-126 457.2 315 68.3
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 3.7e-126 455.7 309 67.3
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.8e-126 455.3 315 69.5
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 8.2e-126 454.5 390 59.0
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 8.2e-126 454.5 320 65.9
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.3e-125 451.8 319 65.8
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.6e-124 450.3 407 57.2
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.5e-124 449.1 319 65.5
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.7e-123 446.8 315 67.0
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-122 444.1 319 68.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.2e-122 442.2 293 67.6
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.5e-122 441.8 315 65.4
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 5.2e-120 435.3 336 61.9
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.0e-115 418.7 271 72.3
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.6e-113 413.7 293 66.6
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 1.0e-112 411.0 317 63.4
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.3e-112 409.8 325 59.4
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 5.7e-111 405.2 290 67.6
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.8e-110 402.9 316 61.4
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 6.3e-110 401.7 284 66.9
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.5e-106 390.6 322 61.8
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.0e-104 384.4 334 57.5
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 8.3e-102 374.8 337 54.9
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.2e-101 372.9 317 59.0
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 7.0e-101 371.7 303 61.4
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.2e-100 370.9 317 55.5
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 2.0e-100 370.2 322 55.9
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.9e-99 366.3 319 55.5
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 8.0e-97 358.2 229 72.9
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 8.0e-97 358.2 292 60.3
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 3.1e-96 356.3 317 54.9
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 2.4e-93 346.7 186 88.7
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.3e-91 340.9 244 66.4
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 1.1e-82 311.2 199 74.4
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 5.6e-82 308.9 355 44.8
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 5.1e-75 285.8 151 91.4
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.2e-73 281.2 218 61.0
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.2e-72 275.8 181 72.4
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.9e-70 270.0 193 68.4
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 8.7e-67 258.5 165 72.7
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.2e-61 240.0 305 47.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.0e-55 220.7 145 72.4
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.3e-51 208.0 140 69.3
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.9e-45 187.6 147 59.9
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 1.2e-39 168.3 125 64.0
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-39 167.5 100 75.0
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.6e-39 167.2 317 36.9
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 6.1e-36 156.0 124 59.7
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 3.0e-35 153.7 109 64.2
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 1.1e-32 145.2 69 94.2
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.8e-32 144.4 113 63.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 3.1e-32 143.7 93 71.0
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 7.9e-28 129.0 75 74.7
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 2.6e-23 114.0 86 62.8
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 7.7e-23 112.5 67 73.1
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 4.2e-21 106.7 165 37.0
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 2.1e-20 104.4 73 63.0
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.0e-19 102.1 72 66.7
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.6e-18 97.4 57 68.4
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 3.6e-12 77.0 43 79.1
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.0e-11 73.9 58 62.1
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 3.1e-08 63.9 51 60.8
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 5.3e-08 63.2 84 44.0
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.5e-07 60.1 80 45.0
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 2.2e-06 57.8 56 55.4
PGR102G2199 Punica granatum HOM05D004085 ORTHO05D000487 8.5e-06 55.8 54 51.9


User provided reference genes

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