Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.4e-131 472.2 248 100.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 5.4e-99 364.8 244 79.5
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 2.0e-98 362.8 251 78.5
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.7e-98 362.5 244 79.1
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.0e-97 360.5 250 78.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 8.6e-97 357.5 247 78.1
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 3.3e-96 355.5 251 78.1
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 5.5e-96 354.8 247 76.5
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.1e-95 352.8 247 76.1
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 8.0e-95 350.9 246 76.8
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.8e-94 349.7 245 73.9
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 5.2e-94 348.2 251 75.3
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 8.9e-94 347.4 251 74.5
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.5e-93 346.7 246 74.4
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.0e-93 346.3 248 73.8
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.4e-93 345.5 244 74.2
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.4e-93 345.1 252 75.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.4e-93 345.1 252 75.0
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 5.7e-93 344.7 244 72.5
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 7.5e-93 344.4 244 72.5
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.5e-93 344.4 244 73.8
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.5e-93 344.4 244 73.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.3e-92 343.6 244 73.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.3e-92 343.6 246 75.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.3e-92 343.6 246 75.2
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.2e-92 342.8 246 74.4
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.7e-92 342.0 251 75.7
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.7e-92 342.0 246 73.2
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.7e-92 342.0 244 75.4
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 8.3e-92 340.9 244 74.6
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.1e-91 340.5 245 73.9
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.8e-91 339.7 246 73.6
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 3.1e-91 339.0 253 71.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 7.0e-91 337.8 251 75.7
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 9.2e-91 337.4 246 71.5
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.2e-90 337.0 247 73.3
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 3.5e-90 335.5 262 69.1
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 5.9e-90 334.7 251 72.9
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.0e-89 334.0 254 69.7
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.0e-89 334.0 244 70.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.0e-89 334.0 247 71.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 2.9e-89 332.4 243 73.3
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.9e-89 332.4 244 70.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.8e-89 332.0 250 70.8
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 3.8e-89 332.0 250 71.6
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 6.6e-89 331.3 247 71.7
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.9e-88 329.7 246 74.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.5e-88 329.3 250 70.4
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.5e-88 329.3 250 70.4
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 5.6e-88 328.2 246 70.7
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 7.3e-88 327.8 246 69.5
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 9.5e-88 327.4 230 77.8
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 9.5e-88 327.4 250 70.0
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 9.5e-88 327.4 248 71.0
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 9.5e-88 327.4 245 71.4
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.6e-87 326.6 244 69.3
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 2.1e-87 326.2 245 72.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.8e-87 325.9 249 72.7
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 4.7e-87 325.1 246 69.9
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 8.0e-87 324.3 250 69.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-87 324.3 245 71.4
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-87 324.3 250 70.8
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-87 324.3 250 70.8
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-87 324.3 250 70.8
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.0e-87 324.3 250 70.0
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.8e-86 323.2 250 71.2
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 5.2e-86 321.6 250 69.6
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 6.8e-86 321.2 245 70.2
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.0e-85 319.7 244 69.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.6e-85 319.3 250 68.4
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.8e-85 318.2 249 67.9
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.5e-85 317.8 244 69.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 9.8e-85 317.4 247 68.8
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.7e-84 316.6 251 67.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.2e-84 316.2 251 67.3
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.2e-84 316.2 208 77.9
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 4.9e-84 315.1 252 64.7
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 4.9e-84 315.1 259 67.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.1e-83 313.9 253 64.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.2e-83 312.4 247 66.8
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 7.0e-83 311.2 254 65.0
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.2e-83 310.8 249 63.9
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 4.6e-82 308.5 249 66.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 6.0e-82 308.1 251 63.7
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 6.0e-82 308.1 251 63.7
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.0e-82 308.1 250 64.8
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 7.8e-82 307.8 231 72.7
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.0e-81 307.4 236 70.3
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.0e-81 307.4 254 63.0
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-81 307.0 236 70.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.3e-81 307.0 251 67.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.7e-81 306.6 251 67.7
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.3e-81 306.2 249 63.1
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.3e-81 306.2 251 63.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.3e-81 306.2 251 63.3
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.3e-81 306.2 245 64.1
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.3e-81 306.2 246 65.9
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.0e-81 305.8 248 63.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 5.0e-81 305.1 245 69.4
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 8.6e-81 304.3 249 64.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.9e-80 303.1 249 65.1
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 9.5e-80 300.8 247 66.0
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 9.5e-80 300.8 268 65.3
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.2e-79 300.4 252 65.5
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.1e-79 299.7 246 64.6
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.8e-79 299.3 244 65.6
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.6e-79 298.9 250 63.6
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.6e-79 298.9 243 63.8
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.6e-79 298.9 219 71.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 6.2e-79 298.1 238 69.3
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.1e-78 297.4 238 67.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.3e-78 296.2 248 64.5
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.2e-78 295.0 247 64.4
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.6e-77 292.7 235 67.7
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 3.4e-77 292.4 244 65.6
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.4e-77 292.4 307 56.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.3e-76 290.4 233 67.8
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.9e-76 289.3 258 64.7
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.9e-76 289.3 250 66.0
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.9e-76 289.3 204 72.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.4e-76 288.1 218 68.8
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 9.2e-75 284.3 244 63.1
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 9.2e-75 284.3 244 63.1
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 9.2e-75 284.3 244 63.1
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.7e-74 282.7 253 61.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 7.8e-74 281.2 251 61.4
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 7.8e-74 281.2 320 52.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-73 280.4 232 66.4
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-73 280.4 244 62.7
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 6.6e-73 278.1 239 63.6
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.3e-72 275.8 246 60.6
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 9.9e-69 264.2 310 51.3
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.7e-68 262.3 248 58.9
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.4e-67 259.6 260 58.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.0e-65 252.7 145 85.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.3e-64 248.1 230 60.0
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.6e-63 246.9 237 59.9
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.2e-61 240.7 232 59.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.4e-59 233.8 243 53.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 6.0e-58 228.4 258 50.8
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 7.8e-58 228.0 144 77.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.8e-55 219.5 136 78.7
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.6e-55 219.2 215 57.2
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 6.2e-55 218.4 243 51.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-54 217.6 166 67.5
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-54 217.2 166 67.5
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 9.9e-45 184.5 117 82.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.2e-44 183.3 194 58.2
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.4e-43 179.9 264 44.3
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 3.2e-43 179.5 113 77.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.5e-42 176.0 285 42.8
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.6e-34 150.6 124 65.3
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.1e-31 140.2 276 38.4
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.7e-31 139.4 132 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 3.8e-28 129.4 261 36.4
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.1e-27 127.9 100 72.0
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 9.7e-24 114.8 95 62.1
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.7e-23 112.8 89 66.3
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-22 110.9 73 80.8
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.2e-21 107.8 73 78.1
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.0e-20 104.8 91 54.9
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.2e-20 103.6 69 71.0
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 7.4e-16 88.6 90 45.6
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 4.8e-15 85.9 121 50.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.1e-14 84.7 110 36.4
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-13 81.3 79 55.7
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.2e-10 71.2 137 42.3
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.6e-10 69.7 81 50.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 6.7e-09 65.5 94 52.1
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.1e-08 64.7 153 32.0


User provided reference genes

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