Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 5.4e-159 564.3 288 100.0
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 3.2e-87 325.9 281 64.8
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 2.1e-78 296.6 297 62.3
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 4.5e-73 278.9 295 59.3
arahy.Tifrunner.gnm1.ann1.I5Q2RG Arachis hypogaea HOM05D003792 ORTHO05D003195 1.7e-67 260.4 299 52.8
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 4.8e-67 258.8 263 58.6
arahy.Tifrunner.gnm1.ann1.SW5XY7 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.1e-66 256.1 303 51.8
Psat7g125520 Pisum sativum HOM05D003792 ORTHO05D003195 7.7e-65 251.5 246 62.6
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 2.1e-62 243.4 280 54.6
Ca_18691_v3 Cicer arietinum L. HOM05D003792 ORTHO05D003195 5.3e-58 228.8 184 67.9
VMungo0251G0642 Vigna mungo HOM05D003792 ORTHO05D003195 9.1e-58 228.0 244 55.3
Phvul.003G291900 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.6e-54 217.2 190 62.1
Lalb_Chr09g0328351 Lupinus albus HOM05D003792 ORTHO05D003195 1.1e-47 194.5 270 51.5
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 3.6e-30 136.3 312 37.8
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 4.0e-29 132.9 284 39.1
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 3.7e-27 126.3 304 35.2
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 5.4e-26 122.5 262 37.8
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.2e-25 121.3 275 37.5
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 8.6e-24 115.2 284 37.0
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 3.3e-23 113.2 269 33.8
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 4.3e-23 112.8 300 36.0
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 2.1e-22 110.5 269 33.5
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 6.2e-22 109.0 298 35.2
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 5.2e-21 105.9 267 34.5
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 2.0e-20 104.0 342 30.4
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 9.8e-20 101.7 294 35.0
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.9e-19 100.1 177 40.1
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-17 94.7 282 33.0
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.6e-17 94.4 282 33.0
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 1.7e-16 90.9 283 32.9
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 8.6e-16 88.6 245 31.0
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 1.9e-15 87.4 243 35.8
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.9e-15 87.4 272 33.1
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 5.6e-15 85.9 259 32.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 9.5e-15 85.1 261 32.6
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 9.5e-15 85.1 252 32.1
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 8.1e-14 82.0 235 31.5
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 8.1e-14 82.0 257 33.1
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.1e-13 81.6 206 32.5
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 5.2e-13 79.3 90 47.8
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 6.8e-13 79.0 227 32.6
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 8.9e-13 78.6 285 29.8
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.2e-12 78.2 206 32.5
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.2e-12 78.2 227 31.7
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.2e-12 78.2 238 31.1
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 2.0e-12 77.4 243 30.9
SGA_v2.0_scaffold32G13060 Striga asiatica HOM05D003792 ORTHO05D003195 2.0e-12 77.4 261 34.1
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 4.4e-12 76.3 224 32.6
Sed0006191 Sechium edule HOM05D003792 ORTHO05D003195 4.4e-12 76.3 254 28.7
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 4.4e-12 76.3 235 32.8
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 7.5e-12 75.5 272 31.2
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 9.8e-12 75.1 253 30.0
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.3e-11 74.7 236 30.1
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 2.2e-11 73.9 250 30.8
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.7e-11 73.2 253 30.4
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 6.4e-11 72.4 238 31.5
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 6.4e-11 72.4 235 33.2
FAN27G2730 Fragaria x ananassa HOM05D025254 ORTHO05D003195 1.1e-10 71.6 289 33.2
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.1e-10 71.6 215 31.2
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.4e-10 71.2 199 31.2
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 1.4e-10 71.2 192 31.2
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.4e-10 71.2 112 45.5
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 1.4e-10 71.2 225 31.6
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.4e-10 71.2 268 31.7
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 2.4e-10 70.5 233 32.6
FAN15G2062 Fragaria x ananassa HOM05D025254 ORTHO05D003195 2.4e-10 70.5 286 32.9
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 3.2e-10 70.1 282 31.6
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 3.2e-10 70.1 229 31.4
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 4.1e-10 69.7 195 32.8
FAN20G1193 Fragaria x ananassa HOM05D025254 ORTHO05D003195 4.1e-10 69.7 282 31.2
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.1e-10 69.7 237 29.5
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 5.4e-10 69.3 286 31.1
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 7.1e-10 68.9 270 28.1
Sopen01g050330 Solanum pennellii HOM05D011234 ORTHO05D003195 1.2e-09 68.2 266 29.7
PGSC0003DMG400006224 Solanum tuberosum HOM05D011234 ORTHO05D003195 1.2e-09 68.2 263 28.5
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 2.7e-09 67.0 213 31.9
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 3.5e-09 66.6 249 31.3
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 4.6e-09 66.2 195 31.3
Solyc01g108100.3 Solanum lycopersicum HOM05D011234 ORTHO05D003195 4.6e-09 66.2 253 31.2
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 6.0e-09 65.9 238 27.7
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.0e-08 65.1 233 31.3
Gohir.A01G007200 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.0e-08 65.1 270 29.3
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 1.0e-08 65.1 234 29.5
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.0e-08 65.1 241 29.0
RcHm_v2.0_Chr6g0257491 Rosa chinensis HOM05D025254 ORTHO05D003195 1.3e-08 64.7 317 28.4
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 1.7e-08 64.3 254 29.5
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.7e-08 64.3 211 29.4
Migut.B00353 Erythranthe guttata HOM05D011234 ORTHO05D003195 1.7e-08 64.3 243 31.7
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.3e-08 63.9 243 29.2
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 3.0e-08 63.5 230 31.7
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 3.0e-08 63.5 196 30.1
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 5.1e-08 62.8 196 30.1
Duzib052G0481 Durio zibethinus HOM05D003792 ORTHO05D003195 5.1e-08 62.8 291 27.5
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 5.1e-08 62.8 216 29.6
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 5.1e-08 62.8 238 29.8
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 6.6e-08 62.4 244 30.3
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 8.6e-08 62.0 230 30.4
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 8.6e-08 62.0 241 30.3
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 8.6e-08 62.0 203 28.6
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 1.1e-07 61.6 240 30.0
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.5e-07 61.2 210 31.0
PGSC0003DMG401025788 Solanum tuberosum HOM05D011234 ORTHO05D003195 1.5e-07 61.2 249 30.5
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.9e-07 60.8 196 29.6
Sp7g31710 Schrenkiella parvula HOM05D009953 ORTHO05D003195 1.9e-07 60.8 248 27.4
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.3e-07 60.1 233 29.2
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.3e-07 60.1 90 40.0
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 3.3e-07 60.1 196 29.6
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.6e-07 59.3 238 31.5
CsaV3_7G008550 Cucumis sativus L. HOM05D003792 ORTHO05D003195 7.3e-07 58.9 245 31.4
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 7.3e-07 58.9 218 27.5
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 9.5e-07 58.5 225 26.7
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 9.5e-07 58.5 225 26.7
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-06 58.2 196 29.6
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.6e-06 57.8 235 27.2
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.6e-06 57.8 235 27.2
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 2.1e-06 57.4 130 34.6
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 2.8e-06 57.0 238 26.9
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 3.6e-06 56.6 239 27.2
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 4.7e-06 56.2 230 30.0
Potri.004G140701 Populus trichocarpa HOM05D003792 ORTHO05D003195 4.7e-06 56.2 247 30.4
Solyc10g050220.2 Solanum lycopersicum HOM05D011234 ORTHO05D003195 4.7e-06 56.2 262 26.0
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 6.2e-06 55.8 255 28.2
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 6.2e-06 55.8 215 30.2
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.2e-06 55.8 238 28.2
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 8.1e-06 55.5 78 37.2


User provided reference genes

Program Settings