Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.4e-221 772.7 395 100.0
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 9.1e-125 451.1 338 73.4
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 1.0e-123 447.6 336 75.6
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 1.7e-123 446.8 342 75.1
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 4.2e-122 442.2 349 72.8
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 7.2e-122 441.4 342 71.9
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 9.4e-122 441.0 349 72.5
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 2.8e-118 429.5 348 66.7
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 1.0e-115 421.0 344 69.8
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 5.0e-115 418.7 347 66.6
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 5.0e-115 418.7 354 66.9
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 6.5e-115 418.3 403 63.0
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 5.5e-114 415.2 353 66.6
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 9.7e-111 404.4 351 67.2
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 1.1e-109 401.0 356 65.2
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 1.4e-109 400.6 358 62.8
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.8e-109 400.2 351 64.1
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 7.0e-109 398.3 333 69.4
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 1.2e-108 397.5 354 63.6
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 1.0e-107 394.4 345 66.1
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.8e-107 392.5 357 62.2
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 3.8e-107 392.5 412 57.0
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 1.1e-106 391.0 348 67.5
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.2e-106 389.4 357 61.3
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 3.2e-106 389.4 357 61.3
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 9.4e-106 387.9 351 63.8
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.2e-105 387.5 344 65.1
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 2.7e-105 386.3 357 60.8
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 2.7e-105 386.3 357 60.8
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 2.3e-104 383.3 354 61.6
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 3.0e-104 382.9 361 60.4
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 3.0e-104 382.9 354 64.7
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 6.7e-104 381.7 376 61.4
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 1.2e-103 380.9 350 63.4
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 3.3e-103 379.4 359 62.4
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 3.3e-103 379.4 359 62.4
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 7.5e-103 378.3 355 62.8
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.3e-102 377.5 352 62.8
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 2.8e-102 376.3 355 63.1
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 2.8e-102 376.3 355 63.1
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 6.3e-102 375.2 354 63.0
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.4e-101 373.2 363 62.3
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 4.1e-101 372.5 351 61.8
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 7.0e-101 371.7 354 62.7
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 9.1e-101 371.3 348 60.9
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 9.1e-101 371.3 361 59.8
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 2.7e-100 369.8 361 60.1
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 3.5e-100 369.4 406 56.7
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 4.5e-100 369.0 353 60.9
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 4.5e-100 369.0 370 61.6
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 7.7e-100 368.2 361 59.8
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 2.2e-99 366.7 352 62.2
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 1.9e-98 363.6 357 58.3
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 3.2e-98 362.8 356 59.8
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 9.4e-98 361.3 347 60.8
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 2.7e-97 359.8 292 68.2
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 3.6e-97 359.4 294 67.7
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 4.7e-97 359.0 358 57.8
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 6.1e-97 358.6 351 61.3
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 6.1e-97 358.6 354 61.3
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 8.0e-97 358.2 352 62.8
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 1.0e-96 357.8 351 59.3
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 8.8e-96 354.8 358 61.5
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 1.5e-95 354.0 359 58.2
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 2.0e-95 353.6 353 60.3
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 7.5e-95 351.7 356 59.8
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 1.3e-94 350.9 353 60.9
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 2.2e-94 350.1 329 62.9
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 2.8e-94 349.7 352 60.8
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 1.4e-93 347.4 267 73.8
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 7.0e-93 345.1 337 59.6
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 2.7e-92 343.2 354 58.5
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 5.9e-92 342.0 348 57.8
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 1.3e-91 340.9 356 57.0
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 6.6e-91 338.6 274 66.1
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 6.6e-91 338.6 355 59.7
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 6.6e-91 338.6 356 56.2
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 8.6e-91 338.2 333 57.7
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.9e-90 337.0 337 58.8
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.9e-90 337.0 356 59.3
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 1.4e-88 330.9 386 54.9
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.4e-88 330.9 344 59.6
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 1.8e-88 330.5 282 64.9
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 2.6e-87 326.6 196 80.6
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 5.7e-87 325.5 367 55.3
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 1.7e-86 323.9 354 55.1
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 2.8e-86 323.2 363 56.2
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 5.4e-85 318.9 359 57.7
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.6e-84 317.4 193 79.8
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 2.7e-84 316.6 371 56.1
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 5.9e-84 315.5 352 52.6
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 7.8e-84 315.1 342 57.0
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 4.3e-82 309.3 373 53.1
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 3.6e-81 306.2 431 47.8
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 6.1e-81 305.4 337 55.5
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 1.3e-78 297.7 391 49.6
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 3.2e-77 293.1 338 53.8
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 1.2e-73 281.2 278 59.7
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.8e-73 280.0 278 59.4
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 1.4e-72 277.7 340 49.4
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 4.1e-69 266.2 279 55.6
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 2.7e-68 263.5 234 62.4
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 4.7e-65 252.7 201 64.7
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 5.4e-61 239.2 260 55.0
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.2e-56 222.6 283 54.8
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.0e-51 208.4 276 42.8
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 1.0e-51 208.4 249 47.4
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 1.9e-50 204.1 172 54.7
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 1.3e-46 191.4 253 41.9
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 9.3e-45 185.3 192 48.4
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 1.3e-22 111.7 82 62.2
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 1.3e-19 101.7 144 38.2
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 3.9e-19 100.1 61 85.2
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 5.7e-18 96.3 132 38.6
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 1.8e-16 91.3 72 56.9
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 5.3e-16 89.7 189 30.7
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 1.5e-15 88.2 52 86.5
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 4.5e-15 86.7 136 36.0
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 6.3e-09 66.2 44 63.6


User provided reference genes

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