Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 4.2e-263 911.0 523 100.0
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 4.6e-193 678.3 525 74.5
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 5.1e-192 674.9 523 71.9
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.1e-189 667.2 530 76.0
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.0e-180 636.3 525 71.6
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.9e-175 619.8 524 70.6
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.1e-170 604.0 498 74.1
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 7.9e-169 597.8 530 66.8
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 5.7e-167 591.7 525 68.0
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 8.5e-155 551.2 534 62.0
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 5.5e-154 548.5 523 64.6
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 9.7e-151 537.7 536 61.4
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.1e-149 532.3 534 60.1
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.2e-145 520.8 570 61.6
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 5.9e-140 501.9 536 57.1
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.3e-139 500.7 543 58.9
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.5e-138 497.3 531 57.6
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.7e-137 492.3 528 55.5
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.8e-136 490.3 533 56.5
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.3e-136 490.0 520 56.7
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 5.2e-136 488.8 529 56.9
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.4e-133 480.7 536 55.8
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.8e-133 480.3 363 72.5
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.0e-132 476.9 528 55.7
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 3.5e-132 476.1 530 56.4
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 4.5e-132 475.7 534 55.6
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.0e-131 474.6 534 55.6
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 3.8e-131 472.6 560 54.5
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.1e-130 471.1 534 59.0
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 5.6e-130 468.8 534 57.5
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 5.6e-130 468.8 536 56.0
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.6e-130 468.8 536 55.6
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 7.3e-130 468.4 536 56.2
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.1e-129 466.8 530 56.6
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.0e-129 464.9 517 55.5
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 3.0e-128 463.0 540 59.3
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 5.2e-128 462.2 496 59.9
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 6.8e-128 461.8 523 55.6
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.2e-127 461.1 536 56.3
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.5e-127 460.7 540 55.0
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-126 457.2 517 55.3
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 2.9e-126 456.4 518 55.0
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-125 454.5 518 54.8
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.9e-125 453.8 539 57.3
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.1e-125 452.6 518 53.7
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 9.2e-125 451.4 515 55.7
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.0e-124 450.3 540 54.3
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 4.6e-124 449.1 528 53.8
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 4.3e-122 442.6 520 54.2
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.3e-122 442.6 536 53.5
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 7.3e-122 441.8 535 53.1
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 9.5e-122 441.4 531 54.0
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 9.5e-122 441.4 526 53.8
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.6e-121 440.7 517 55.7
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.8e-120 437.2 535 52.5
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 6.8e-120 435.3 622 48.2
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 8.9e-120 434.9 521 57.2
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.4e-119 432.6 537 54.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 7.5e-119 431.8 526 53.8
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 7.5e-119 431.8 530 53.0
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.7e-118 430.6 522 54.4
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.2e-118 430.3 511 55.8
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 8.3e-118 428.3 521 55.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.9e-117 427.2 486 55.1
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.9e-117 427.2 516 55.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 6.0e-116 422.2 521 51.1
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.0e-115 421.4 511 53.0
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.9e-115 419.5 552 50.0
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 8.6e-115 418.3 530 55.1
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-113 414.1 520 52.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.8e-113 413.3 526 51.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.1e-112 411.4 520 52.7
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 3.1e-112 409.8 488 54.5
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 9.9e-111 404.8 524 52.7
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 9.2e-109 398.3 511 51.5
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.3e-107 394.4 520 49.6
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 3.0e-107 393.3 493 50.1
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 6.6e-107 392.1 547 47.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 3.6e-105 386.3 515 47.6
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 8.1e-105 385.2 518 50.6
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.2e-104 382.5 485 50.1
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 8.9e-104 381.7 527 50.3
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 3.4e-103 379.8 523 48.6
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.8e-102 376.3 529 50.9
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 6.4e-102 375.6 538 47.6
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 9.2e-101 371.7 530 49.4
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.6e-100 370.9 414 63.5
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 6.0e-100 369.0 541 46.8
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 6.0e-100 369.0 525 48.6
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.3e-99 367.9 558 43.7
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.3e-99 367.1 541 47.3
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 4.3e-98 362.8 538 46.7
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 9.6e-98 361.7 524 46.8
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 9.0e-96 355.1 530 46.2
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.6e-95 353.6 547 44.1
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 9.9e-95 351.7 532 44.2
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.7e-94 350.9 498 47.4
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 2.2e-94 350.5 518 44.6
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 2.9e-94 350.1 541 43.4
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 6.4e-94 349.0 509 47.0
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.4e-93 347.8 547 44.4
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.9e-93 347.4 518 44.8
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.4e-93 347.1 543 43.6
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 5.4e-93 345.9 543 43.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 5.4e-93 345.9 508 46.5
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 7.1e-93 345.5 537 44.1
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 7.1e-93 345.5 545 43.3
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 3.9e-91 339.7 545 42.4
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 6.6e-91 339.0 511 44.2
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.9e-90 337.4 525 44.6
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 9.6e-90 335.1 552 42.4
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.1e-89 334.0 537 42.8
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 6.2e-89 332.4 542 43.5
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 8.1e-89 332.0 537 42.6
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.4e-88 331.3 537 42.8
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 3.1e-88 330.1 506 43.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 5.3e-88 329.3 527 42.9
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 7.1e-85 318.9 524 45.6
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.6e-84 317.8 364 54.7
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.3e-83 313.9 512 42.2
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.1e-83 312.8 384 53.1
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.5e-82 310.5 508 43.1
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 5.6e-82 309.3 556 42.1
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.3e-81 308.1 316 59.8
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 6.9e-80 302.4 441 51.7
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 5.8e-79 299.3 542 44.1
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 5.5e-77 292.7 370 53.2
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 3.7e-73 280.0 540 40.7
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.4e-72 278.1 495 41.2
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.8e-71 272.7 480 43.8
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.3e-70 271.6 495 42.4
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 2.1e-68 264.2 508 39.2
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.1e-68 264.2 379 47.0
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.3e-67 261.5 505 41.2
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 5.7e-66 256.1 533 36.6
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 9.7e-66 255.4 254 67.3
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 4.1e-64 250.0 329 58.1
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.1e-61 241.9 470 37.9
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 6.1e-60 236.1 246 59.3
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 9.1e-56 222.2 384 37.5
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 4.5e-55 219.9 276 50.4
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 4.4e-50 203.4 403 37.0
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 6.3e-49 199.5 231 52.8
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.6e-44 184.9 494 33.2
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.6e-44 184.9 492 32.5
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.1e-44 183.0 406 36.0
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.7e-41 174.9 395 33.4
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.1e-40 172.2 395 33.4
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.8e-40 171.4 400 32.8
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.0e-38 165.6 187 54.0
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.4e-37 159.1 264 42.0
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.4e-35 155.2 542 30.1
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.5e-34 151.8 482 31.1
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 5.9e-31 139.8 546 30.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.9e-29 134.8 203 50.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.1e-28 131.3 193 43.5
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-26 125.6 486 28.6
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 1.5e-26 125.2 153 51.0
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.7e-26 123.2 230 38.7
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 4.1e-24 117.1 350 32.0
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.0e-23 114.8 204 40.7
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.5e-23 114.0 277 33.9
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 7.7e-23 112.8 302 31.5
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 4.0e-19 100.5 102 57.8
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.4e-16 90.1 123 46.3
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 3.5e-15 87.4 130 46.9
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.3e-14 85.5 71 62.0
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 2.3e-14 84.7 144 36.1
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.9e-14 84.3 110 48.2
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 7.3e-13 79.7 70 57.1
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.2e-10 72.4 89 50.6
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.4e-10 70.9 194 44.8
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.2e-09 68.2 79 45.6
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.9e-09 67.8 48 66.7
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 2.9e-09 67.8 83 47.0
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 7.0e-08 63.2 63 50.8
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 2.7e-07 61.2 44 68.2


User provided reference genes

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