Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 6.9e-292 1006.5 486 100.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.8e-244 849.0 448 89.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 7.7e-243 843.6 448 88.4
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 3.6e-240 834.7 452 86.1
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.1e-236 823.2 445 86.5
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.0e-235 818.9 447 86.6
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.7e-234 815.8 444 87.2
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.9e-233 812.4 445 85.4
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 7.2e-233 810.4 445 83.8
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 7.2e-233 810.4 447 85.0
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.3e-231 805.4 447 82.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.0e-230 802.4 451 82.9
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.0e-230 802.4 451 82.9
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.6e-230 802.0 449 83.3
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 4.4e-230 801.2 447 84.1
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 9.8e-230 800.0 442 83.9
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.3e-229 799.7 446 84.1
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.3e-229 799.7 447 82.8
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 2.2e-229 798.9 451 82.3
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.2e-229 798.9 446 84.1
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.8e-229 798.5 446 82.3
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.8e-229 798.5 447 83.2
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 6.3e-229 797.3 445 82.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 6.3e-229 797.3 447 83.7
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 8.3e-229 797.0 448 82.8
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.1e-228 796.6 447 82.8
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.1e-228 796.6 445 83.6
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.4e-228 795.4 447 82.1
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.4e-228 794.3 447 82.8
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 9.2e-228 793.5 445 83.6
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.2e-227 793.1 447 82.6
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.2e-227 793.1 448 82.1
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 2.0e-227 792.3 448 82.4
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.0e-227 792.3 445 83.1
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 4.5e-227 791.2 445 82.7
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.9e-227 790.8 445 81.8
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.7e-227 790.4 447 82.3
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 7.7e-227 790.4 445 83.8
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.0e-226 790.0 448 82.4
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.3e-226 789.6 447 81.9
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.7e-226 789.3 444 82.4
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 6.6e-226 787.3 447 81.9
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-225 786.6 448 81.0
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.5e-225 786.2 447 82.1
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 3.3e-225 785.0 445 81.8
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.3e-225 785.0 447 80.3
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 3.3e-225 785.0 470 78.3
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.3e-225 784.6 445 82.7
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.6e-225 784.3 450 80.4
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.2e-224 783.1 452 80.8
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.2e-224 783.1 458 79.3
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.8e-224 781.9 447 81.0
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 3.6e-224 781.6 442 81.7
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.7e-224 781.2 457 80.5
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.1e-224 780.8 442 82.6
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.4e-223 779.6 447 80.3
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.8e-223 779.2 443 82.4
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 4.0e-223 778.1 442 82.1
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 4.0e-223 778.1 442 82.4
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.0e-223 778.1 445 82.2
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 6.8e-223 777.3 432 82.6
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 8.9e-223 776.9 446 79.6
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 8.9e-223 776.9 446 81.4
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.2e-222 776.5 447 80.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.5e-222 776.2 447 79.9
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.6e-222 775.4 449 78.8
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 2.6e-222 775.4 447 79.9
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.6e-222 775.4 446 79.8
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 2.6e-222 775.4 447 79.9
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 2.6e-222 775.4 446 79.8
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.6e-222 775.4 484 75.8
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 4.4e-222 774.6 442 81.9
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 5.7e-222 774.2 482 76.1
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.3e-221 773.1 443 80.8
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.7e-221 772.7 442 80.5
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.7e-221 772.7 442 81.2
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.2e-221 772.3 447 80.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.7e-221 771.5 446 79.4
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 4.9e-221 771.2 444 81.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.9e-221 771.2 447 79.4
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.1e-220 770.0 447 80.3
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.1e-220 770.0 451 80.3
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.4e-220 769.6 440 81.6
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 3.2e-220 768.5 447 79.2
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.1e-220 768.1 446 81.6
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.7e-219 765.4 482 75.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 5.9e-219 764.2 447 78.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 5.9e-219 764.2 442 79.4
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 7.8e-219 763.8 447 78.1
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.0e-218 763.5 447 78.1
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.0e-218 763.5 447 78.1
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.3e-218 762.3 447 80.1
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 8.6e-218 760.4 450 80.0
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.5e-217 759.6 450 78.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.3e-217 757.3 453 78.6
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 6.2e-216 754.2 447 79.0
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.0e-215 753.4 499 72.5
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.0e-215 753.4 447 79.0
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.5e-214 749.6 445 76.4
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 6.4e-213 744.2 448 75.4
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 8.3e-213 743.8 445 78.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 2.3e-210 735.7 446 76.9
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.3e-207 725.7 441 77.6
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 4.0e-207 724.9 446 75.8
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 4.0e-207 724.9 380 90.5
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 6.8e-207 724.2 444 76.4
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.9e-204 716.1 462 74.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 9.2e-204 713.8 406 81.5
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.5e-201 706.4 479 72.2
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.1e-200 700.7 446 75.1
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.6e-195 684.9 440 73.0
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 5.6e-193 677.9 440 72.0
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.2e-192 676.8 457 71.8
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 8.1e-192 674.1 444 69.8
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.7e-189 666.4 371 82.2
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.8e-189 665.2 382 80.4
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.1e-188 663.7 451 70.5
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-178 630.2 445 69.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.9e-172 609.8 334 85.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 6.5e-165 584.7 449 65.5
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.8e-159 566.6 426 66.9
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.1e-151 538.9 295 86.1
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 9.1e-151 537.7 297 84.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 7.9e-147 524.6 313 74.4
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.7e-144 515.8 455 60.9
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 3.1e-135 486.1 282 79.1
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.6e-126 457.2 446 54.9
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 4.4e-121 439.1 376 57.7
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-115 420.6 287 67.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 7.3e-100 368.6 274 65.0
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.6e-86 324.3 193 73.6
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.6e-73 280.4 162 80.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 8.1e-67 258.8 140 85.0
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.9e-65 251.9 145 77.2
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.7e-64 251.1 271 48.3
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 2.7e-62 243.8 198 63.1
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.0e-61 240.4 146 76.7
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.1e-60 238.4 147 72.1
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-60 238.0 148 70.9
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 9.0e-58 228.8 146 68.5
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.6e-57 227.3 186 58.1
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.8e-51 206.5 135 74.1
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 3.8e-48 196.8 111 86.5
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 5.7e-44 183.0 136 64.0
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.4e-37 161.8 112 67.9
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 2.6e-33 147.5 133 53.4
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 5.0e-24 116.7 71 73.2
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 7.2e-23 112.8 68 72.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 9.4e-23 112.5 55 90.9
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.4e-23 112.5 69 72.5
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 9.4e-23 112.5 66 75.8
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.2e-22 112.1 72 68.1
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-20 105.5 68 66.2
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.3e-19 102.1 71 64.8
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 2.6e-17 94.4 74 55.4
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.2e-16 91.3 67 61.2
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 6.1e-14 83.2 60 65.0
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.2e-13 80.1 46 71.7
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.3e-11 75.5 42 76.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.3e-11 75.5 67 49.3
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 9.1e-10 69.3 35 88.6


User provided reference genes

Program Settings