Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 3.7e-221 771.2 371 100.0
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 2.0e-174 615.9 370 80.5
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 4.4e-174 614.8 371 80.3
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 3.6e-168 595.1 372 77.7
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 4.8e-168 594.7 372 78.2
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 2.4e-167 592.4 355 80.3
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 4.5e-166 588.2 373 76.4
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.2e-165 585.9 365 77.3
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 2.5e-161 572.4 346 79.2
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 9.0e-159 563.9 358 76.5
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 7.6e-158 560.8 355 77.5
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.9e-148 529.6 360 71.1
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 5.5e-148 528.1 325 75.4
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.6e-147 526.6 325 76.0
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 2.1e-147 526.2 321 77.6
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 2.5e-145 519.2 342 71.6
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 7.4e-145 517.7 345 71.3
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 9.7e-145 517.3 345 71.0
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 2.2e-144 516.2 344 71.5
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.2e-144 516.2 341 71.3
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 2.2e-144 516.2 327 74.0
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 4.8e-144 515.0 348 70.4
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 6.3e-144 514.6 334 73.4
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 6.3e-144 514.6 327 74.0
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 1.5e-142 510.0 328 72.3
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 3.4e-142 508.8 356 69.4
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 3.4e-142 508.8 325 73.2
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 1.0e-141 507.3 328 72.6
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.3e-141 506.9 348 70.1
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 1.3e-141 506.9 324 71.3
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-141 506.5 326 72.4
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.7e-141 506.5 324 72.5
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.8e-141 505.4 326 72.1
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 5.0e-141 505.0 332 70.2
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.1e-140 503.8 326 72.4
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.1e-140 503.8 326 72.4
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 1.4e-140 503.4 341 70.7
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.9e-140 503.1 324 73.1
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 2.5e-140 502.7 324 72.5
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.2e-140 502.3 322 72.7
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 4.2e-140 501.9 319 74.6
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 5.5e-140 501.5 342 71.1
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 5.5e-140 501.5 343 69.4
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 9.4e-140 500.7 320 73.1
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 9.4e-140 500.7 345 68.7
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 1.6e-139 500.0 324 72.2
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 2.1e-139 499.6 323 72.4
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 4.6e-139 498.4 324 73.5
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 4.6e-139 498.4 324 73.5
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 4.6e-139 498.4 327 72.5
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 4.6e-139 498.4 338 68.0
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 4.6e-139 498.4 328 71.0
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 6.1e-139 498.0 342 70.5
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.4e-138 496.9 325 71.4
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.4e-138 496.9 322 71.1
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.3e-138 496.1 327 71.3
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 6.7e-138 494.6 316 73.1
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.1e-137 493.8 321 71.3
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 4.3e-137 491.9 316 74.7
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 5.7e-137 491.5 316 72.5
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 9.7e-137 490.7 324 70.7
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.3e-136 490.3 325 73.5
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.3e-136 490.3 327 70.3
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.3e-136 490.3 323 70.9
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 1.7e-136 490.0 320 73.1
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.7e-136 490.0 328 71.0
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.7e-136 490.0 324 70.4
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 3.7e-136 488.8 347 65.7
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 4.8e-136 488.4 321 71.0
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 6.3e-136 488.0 319 70.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 6.3e-136 488.0 320 72.5
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.4e-135 486.9 323 70.9
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.4e-135 486.1 325 69.5
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 4.1e-135 485.3 321 70.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 4.1e-135 485.3 321 69.8
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.3e-135 485.0 323 70.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 9.1e-135 484.2 320 71.9
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.2e-134 483.8 321 69.8
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 2.0e-134 483.0 320 72.5
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.0e-134 483.0 320 72.8
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 4.5e-134 481.9 321 69.5
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 5.9e-134 481.5 319 71.5
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 7.7e-134 481.1 320 71.6
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 3.8e-133 478.8 322 68.3
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 3.8e-133 478.8 320 71.6
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 3.8e-133 478.8 317 70.7
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 5.0e-133 478.4 343 66.8
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 6.5e-133 478.0 320 71.9
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 5.5e-132 474.9 318 71.1
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.2e-131 473.8 355 64.2
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 4.7e-131 471.9 321 68.2
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.0e-130 470.7 322 68.3
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.6e-129 466.1 331 67.1
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.4e-129 465.3 321 68.2
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 1.1e-127 460.7 318 68.2
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.5e-126 455.7 319 67.7
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.9e-124 449.9 320 67.5
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 9.4e-124 447.6 313 69.6
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 4.0e-122 442.2 313 67.7
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 5.7e-121 438.3 316 66.8
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.8e-120 436.0 319 63.9
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.5e-117 424.5 332 63.3
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.5e-117 424.5 333 63.7
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 2.3e-114 416.4 324 64.8
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 6.3e-112 408.3 324 58.3
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 6.3e-112 408.3 317 60.9
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.1e-111 406.0 352 58.2
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 7.0e-111 404.8 320 63.1
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 3.5e-110 402.5 287 65.9
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 5.0e-109 398.7 326 57.4
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.2e-108 395.6 455 48.1
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 4.2e-108 395.6 316 61.7
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.6e-107 393.7 320 57.2
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 8.0e-107 391.3 241 74.3
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 4.0e-106 389.0 315 58.1
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 8.8e-106 387.9 295 62.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.5e-105 387.1 345 58.0
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.5e-105 387.1 345 58.0
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.7e-104 382.5 323 57.9
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.6e-91 340.5 199 76.9
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 6.2e-91 338.6 201 76.6
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 3.2e-87 326.2 223 70.0
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 7.3e-84 315.1 252 61.9
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 3.1e-82 309.7 169 81.1
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.4e-81 306.2 225 66.2
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.6e-75 287.3 175 74.9
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 8.4e-72 275.0 197 67.5
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 2.4e-71 273.5 315 45.1
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.5e-68 263.5 324 46.6
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.4e-42 177.9 135 60.7
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 4.0e-42 176.4 86 90.7
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 1.4e-39 167.9 219 41.6
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-32 144.8 105 65.7
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.8e-29 134.4 78 74.4
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.1e-29 132.9 110 60.9
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.1e-26 125.2 79 73.4
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.9e-25 119.4 68 76.5
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 5.0e-24 116.3 327 27.8
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 5.7e-20 102.8 322 28.3
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 2.4e-18 97.4 60 76.7
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.0e-16 89.7 100 48.0
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 5.2e-13 79.7 81 56.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.0e-09 67.8 77 44.2
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 5.9e-09 66.2 253 26.9
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 7.7e-09 65.9 50 54.0
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.5e-07 60.8 40 70.0


User provided reference genes

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