Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 1.3e-88 329.7 163 100.0
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 2.2e-64 249.2 165 76.4
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 2.8e-64 248.8 166 77.1
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 6.9e-63 244.2 165 76.4
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 5.9e-62 241.1 156 78.2
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 7.2e-60 234.2 165 75.8
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 1.6e-59 233.0 167 74.9
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 5.7e-57 224.6 166 68.1
arahy.Tifrunner.gnm1.ann1.FUMC5T Arachis hypogaea HOM05D008187 ORTHO05D009830 5.9e-46 188.0 155 63.2
arahy.Tifrunner.gnm1.ann1.61TZTK Arachis hypogaea HOM05D008187 ORTHO05D009830 9.7e-41 170.6 120 72.5
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 2.9e-37 159.1 154 56.5
QL03p039185 Quercus lobata HOM05D008187 ORTHO05D009830 8.5e-37 157.5 172 51.2
GSVIVG01011592001 Vitis vinifera HOM05D008187 ORTHO05D009830 1.2e-35 153.7 167 50.3
TPR.G11831 Trifolium pratense HOM05D008187 ORTHO05D009830 1.6e-35 153.3 116 69.0
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 3.0e-34 149.1 175 48.6
Thecc.02G303500 Theobroma cacao HOM05D008187 ORTHO05D009830 6.8e-34 147.9 161 50.9
CiPaw.06G058400 Carya illinoinensis HOM05D008187 ORTHO05D009830 2.0e-33 146.4 149 51.7
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 3.4e-33 145.6 163 49.7
CiPaw.05G158900 Carya illinoinensis HOM05D008187 ORTHO05D009830 9.8e-33 144.1 162 51.2
Manes.17G089700 Manihot esculenta HOM05D008187 ORTHO05D009830 2.2e-32 142.9 164 48.2
Manes.15G138900 Manihot esculenta HOM05D008187 ORTHO05D009830 6.3e-32 141.4 132 55.3
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 8.3e-32 141.0 137 54.0
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 8.3e-32 141.0 137 54.0
COL.COLO4_27577 Corchorus olitorius HOM05D008187 ORTHO05D009830 1.1e-31 140.6 160 48.1
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 2.4e-31 139.4 124 58.9
Hma1.2p1_0441F.1_g153840 Hydrangea macrophylla HOM05D008187 ORTHO05D009830 1.2e-30 137.1 147 50.3
Prupe.1G338300 Prunus persica HOM05D008187 ORTHO05D009830 3.8e-29 132.1 176 45.5
Potri.008G140000 Populus trichocarpa HOM05D008187 ORTHO05D009830 1.9e-28 129.8 166 47.0
TWI74G1547 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 7.2e-28 127.9 130 56.2
FAN12G2367 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.2e-27 127.1 174 46.6
FAN12G2898 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.2e-27 127.1 174 46.6
Potri.010G101500 Populus trichocarpa HOM05D008187 ORTHO05D009830 1.6e-27 126.7 166 47.6
FAN07G0781 Fragaria x ananassa HOM05D008187 ORTHO05D009830 2.1e-27 126.3 174 46.0
FAN17G0865 Fragaria x ananassa HOM05D008187 ORTHO05D009830 3.6e-27 125.6 174 46.0
MD16G1013000 Malus domestica HOM05D008187 ORTHO05D009830 3.6e-27 125.6 177 43.5
FvH4_4g26140 Fragaria vesca HOM05D008187 ORTHO05D009830 1.0e-26 124.0 174 46.0
FAN22G0157 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.4e-26 123.6 171 46.2
Sabra08G0106100 Salix brachista HOM05D008187 ORTHO05D009830 1.4e-26 123.6 164 45.7
Eucgr.B02651 Eucalyptus grandis HOM05D008187 ORTHO05D009830 3.0e-26 122.5 162 44.4
TPR.G34432 Trifolium pratense HOM05D008187 ORTHO05D009830 1.2e-25 120.6 75 76.0
Ciclev10016789m.g Citrus clementina HOM05D008187 ORTHO05D009830 1.5e-25 120.2 166 44.6
Sabra10G0074300 Salix brachista HOM05D008187 ORTHO05D009830 7.0e-23 111.3 167 44.9
TWI77G0539 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 1.6e-22 110.2 146 47.9
Atru.chr11.1001 Acer truncatum HOM05D008187 ORTHO05D009830 5.9e-22 108.2 174 45.4
Actinidia34059 Actinidia chinensis HOM05D008187 ORTHO05D009830 1.9e-20 103.2 124 46.8
Actinidia38421 Actinidia chinensis HOM05D008187 ORTHO05D009830 3.1e-18 95.9 94 52.1
MBI19_g01917_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D009830 4.0e-18 95.5 125 48.0
Sed0002824 Sechium edule HOM05D008187 ORTHO05D009830 4.0e-18 95.5 140 42.9
Gohir.D04G188100 Gossypium hirsutum HOM05D008187 ORTHO05D009830 5.2e-18 95.1 123 45.5
CANSAT78G2356 Cannabis sativa HOM05D008187 ORTHO05D009830 1.5e-17 93.6 148 41.2
Gohir.A04G143800 Gossypium hirsutum HOM05D008187 ORTHO05D009830 1.5e-17 93.6 123 44.7
Rhsim09G0085300 Rhododendron simsii HOM05D008187 ORTHO05D009830 3.4e-17 92.4 165 38.8
Gorai.012G183500 Gossypium raimondii HOM05D008187 ORTHO05D009830 1.7e-16 90.1 125 44.8
FAN17G0113 Fragaria x ananassa HOM05D008187 ORTHO05D009830 2.9e-16 89.4 139 41.7
Lj6A731T87 Lonicera japonica HOM05D008187 ORTHO05D009830 4.9e-16 88.6 123 40.7
Haze_10807 Corylus avellana HOM05D008187 ORTHO05D009830 6.4e-16 88.2 66 65.2
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 6.4e-16 88.2 169 39.6
MELO3C020063.2 Cucumis melo HOM05D008187 ORTHO05D009830 3.2e-15 85.9 119 47.9
CsaV3_5G012950 Cucumis sativus L. HOM05D008187 ORTHO05D009830 4.1e-15 85.5 119 47.9
ClCG11G000980 Citrullus lanatus HOM05D008187 ORTHO05D009830 7.0e-15 84.7 124 45.2
DCAR_023540 Daucus carota HOM05D008187 ORTHO05D009830 6.0e-14 81.6 159 33.3
HanXRQChr17g0566281 Helianthus annuus HOM05D008187 ORTHO05D009830 3.9e-13 79.0 153 37.9
TAR374G1419 Trochodendron aralioides HOM05D003603 ORTHO05D009830 3.9e-13 79.0 66 54.5
Haze_10806 Corylus avellana HOM05D008187 ORTHO05D009830 1.5e-12 77.0 120 40.0
Lsat_1_v5_gn_4_24181 Lactuca sativa HOM05D008187 ORTHO05D009830 2.5e-12 76.3 145 35.2
THA.LOC104805100 Tarenaya hassleriana HOM05D010619 ORTHO05D009830 9.5e-12 74.3 128 41.4
HanXRQChr16g0527611 Helianthus annuus HOM05D008187 ORTHO05D009830 1.6e-11 73.6 173 35.3
Nn3g18471 Nelumbo nucifera HOM05D008187 ORTHO05D009830 1.1e-10 70.9 211 31.3
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 4.0e-10 68.9 76 39.5
DCAR_026822 Daucus carota HOM05D008187 ORTHO05D009830 4.0e-10 68.9 174 31.0
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 1.5e-09 67.0 99 37.4
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 1.5e-09 67.0 111 35.1
A05p10140 Brassica napus HOM05D003603 ORTHO05D004186 2.6e-09 66.2 93 35.5
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 5.8e-09 65.1 75 40.0
AUR62007409 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.8e-09 64.3 98 37.8
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 1.3e-08 63.9 55 43.6
BcaC04g21548 Brassica carinata HOM05D010619 ORTHO05D009830 1.3e-08 63.9 151 33.1
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 1.3e-08 63.9 73 39.7
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 1.3e-08 63.9 73 39.7
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 1.7e-08 63.5 74 43.2
AUR62027323 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.7e-08 63.5 98 37.8
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 2.2e-08 63.2 61 42.6
BraA05t19955Z Brassica rapa HOM05D003603 ORTHO05D004186 2.2e-08 63.2 93 34.4
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 2.2e-08 63.2 73 39.7
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 2.2e-08 63.2 68 38.2
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 2.2e-08 63.2 98 37.8
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 2.2e-08 63.2 98 37.8
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 2.9e-08 62.8 73 39.7
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 2.9e-08 62.8 73 38.4
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 2.9e-08 62.8 73 38.4
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 2.9e-08 62.8 73 38.4
C09p30500 Brassica napus HOM05D010619 ORTHO05D009830 2.9e-08 62.8 151 31.8
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 2.9e-08 62.8 73 38.4
BolC9t55912H Brassica oleracea HOM05D010619 ORTHO05D009830 2.9e-08 62.8 148 33.1
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 2.9e-08 62.8 73 38.4
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 3.7e-08 62.4 54 46.3
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 3.7e-08 62.4 54 44.4
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 4.9e-08 62.0 74 43.2
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 4.9e-08 62.0 97 36.1
Sp2g13350 Schrenkiella parvula HOM05D010619 ORTHO05D009830 4.9e-08 62.0 155 32.9
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 6.4e-08 61.6 54 44.4
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 6.4e-08 61.6 54 44.4
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 6.4e-08 61.6 74 37.8
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 8.3e-08 61.2 110 31.8
BcaB07g30724 Brassica carinata HOM05D010619 ORTHO05D009830 8.3e-08 61.2 150 34.0
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 8.3e-08 61.2 110 31.8
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 8.3e-08 61.2 61 42.6
ECA233G2030 Erigeron canadensis HOM05D003603 ORTHO05D004186 8.3e-08 61.2 104 31.7
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 8.3e-08 61.2 61 42.6
Psat2g140080 Pisum sativum HOM05D003603 ORTHO05D004186 8.3e-08 61.2 81 40.7
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 8.3e-08 61.2 73 38.4
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 1.1e-07 60.8 54 44.4
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 1.1e-07 60.8 54 44.4
BcaB03g13776 Brassica carinata HOM05D003603 ORTHO05D004186 1.1e-07 60.8 72 40.3
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 1.1e-07 60.8 68 41.2
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 1.1e-07 60.8 68 41.2
VMungo1215G0432 Vigna mungo HOM05D003603 ORTHO05D004186 1.1e-07 60.8 68 41.2
BcaC05g27220 Brassica carinata HOM05D003603 ORTHO05D004186 1.4e-07 60.5 80 35.0
BolC5t31853H Brassica oleracea HOM05D003603 ORTHO05D004186 1.4e-07 60.5 80 35.0
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 1.4e-07 60.5 64 43.8
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 1.4e-07 60.5 75 40.0
MD06G1024900 Malus domestica HOM05D003603 ORTHO05D004186 1.9e-07 60.1 78 38.5
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 1.9e-07 60.1 61 45.9
Aa31LG9G15610 Aethionema arabicum HOM05D003603 ORTHO05D004186 2.4e-07 59.7 53 43.4
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 2.4e-07 59.7 102 37.3
Manes.17G016002 Manihot esculenta HOM05D003603 ORTHO05D004186 2.4e-07 59.7 54 42.6
Eucgr.D02636 Eucalyptus grandis HOM05D003603 ORTHO05D004186 3.2e-07 59.3 75 37.3
Potri.001G135000 Populus trichocarpa HOM05D003603 ORTHO05D004186 3.2e-07 59.3 97 33.0
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 3.2e-07 59.3 61 41.0
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 4.1e-07 58.9 61 41.0
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 4.1e-07 58.9 61 41.0
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 4.1e-07 58.9 61 41.0
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 4.1e-07 58.9 61 41.0
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 4.1e-07 58.9 61 41.0
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 4.1e-07 58.9 75 34.7
Manes.15G192766 Manihot esculenta HOM05D003603 ORTHO05D004186 4.1e-07 58.9 74 37.8
Prupe.5G026000 Prunus persica HOM05D003603 ORTHO05D004186 4.1e-07 58.9 77 37.7
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 4.1e-07 58.9 61 41.0
AL1G46040 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 5.4e-07 58.5 110 30.0
FAN04G2484 Fragaria x ananassa HOM05D003603 ORTHO05D004186 5.4e-07 58.5 61 41.0
Nn3g19353 Nelumbo nucifera HOM05D003603 ORTHO05D004186 5.4e-07 58.5 76 36.8
Sabra01G0104400 Salix brachista HOM05D003603 ORTHO05D004186 5.4e-07 58.5 76 35.5
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 5.4e-07 58.5 54 42.6
Glyma.01G010900 Glycine max HOM05D003603 ORTHO05D004186 7.1e-07 58.2 68 39.7
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 7.1e-07 58.2 79 34.2
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 7.1e-07 58.2 79 34.2
Gorai.003G186200 Gossypium raimondii HOM05D003080 ORTHO05D003601 7.1e-07 58.2 79 34.2
Thecc.03G312100 Theobroma cacao HOM05D003603 ORTHO05D004186 7.1e-07 58.2 82 34.1
CiPaw.12G069800 Carya illinoinensis HOM05D003603 ORTHO05D004186 9.2e-07 57.8 78 42.3
Cc08_g03850 Coffea canephora HOM05D003603 ORTHO05D004186 9.2e-07 57.8 78 38.5
Gohir.A11G028400 Gossypium hirsutum HOM05D003603 ORTHO05D004186 9.2e-07 57.8 70 37.1
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 9.2e-07 57.8 75 37.3
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 1.2e-06 57.4 64 42.2
AT2G01913 Arabidopsis thaliana HOM05D010619 ORTHO05D009830 1.2e-06 57.4 149 30.9
CANSAT21G0457 Cannabis sativa HOM05D003603 ORTHO05D004186 1.2e-06 57.4 98 32.7
CANSAT56G3990 Cannabis sativa HOM05D003603 ORTHO05D004186 1.2e-06 57.4 98 32.7
Ciclev10002760m.g Citrus clementina HOM05D003603 ORTHO05D004186 1.2e-06 57.4 74 36.5
Gohir.D11G030800 Gossypium hirsutum HOM05D003603 ORTHO05D004186 1.2e-06 57.4 70 37.1
Hma1.2p1_1819F.1_g304070 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 1.2e-06 57.4 75 34.7
Lj2g0008166 Lotus japonicus HOM05D003603 ORTHO05D004186 1.2e-06 57.4 93 34.4
SGA_v2.0_scaffold111G31383 Striga asiatica HOM05D003603 ORTHO05D004186 1.2e-06 57.4 84 32.1
Gorai.007G033700 Gossypium raimondii HOM05D003603 ORTHO05D004186 1.6e-06 57.0 70 37.1
EL10Ac5g11930 Beta vulgaris HOM05D003603 ORTHO05D004186 2.1e-06 56.6 74 41.9
HanXRQChr13g0404821 Helianthus annuus HOM05D003603 ORTHO05D004186 2.1e-06 56.6 70 34.3
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 2.1e-06 56.6 93 34.4
AL5G11040 Arabidopsis lyrata HOM05D010619 ORTHO05D009830 2.7e-06 56.2 148 31.8
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 2.7e-06 56.2 79 38.0
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 3.5e-06 55.8 68 38.2
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 3.5e-06 55.8 88 36.4
Dinv06911 Davidia involucrata HOM05D003603 ORTHO05D004186 4.6e-06 55.5 62 41.9
Ah.12g055980 Amaranthus hybridus HOM05D003603 ORTHO05D004186 6.0e-06 55.1 96 33.3
A09p23610 Brassica napus HOM05D010619 ORTHO05D009830 6.0e-06 55.1 146 31.5
BraA09t37965Z Brassica rapa HOM05D010619 ORTHO05D009830 6.0e-06 55.1 146 31.5
CSS0011703 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 6.0e-06 55.1 104 30.8
TAR375G0833 Trochodendron aralioides HOM05D003603 ORTHO05D004186 6.0e-06 55.1 61 39.3
BcaNung07274 Brassica carinata HOM05D003603 ORTHO05D004186 7.8e-06 54.7 54 40.7
C04p64400 Brassica napus HOM05D003603 ORTHO05D004186 7.8e-06 54.7 54 40.7
BolC4t27924H Brassica oleracea HOM05D003603 ORTHO05D004186 7.8e-06 54.7 54 40.7
Thhalv10005091m.g Eutrema salsugineum HOM05D010619 ORTHO05D009830 7.8e-06 54.7 151 29.8


User provided reference genes

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