Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 5.3e-257 890.6 468 100.0
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 2.6e-163 579.3 455 65.7
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 3.4e-163 578.9 466 68.5
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 3.2e-161 572.4 457 66.7
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.6e-160 570.1 427 68.6
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 4.0e-156 555.4 489 64.0
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 1.2e-155 553.9 467 66.4
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 1.5e-155 553.5 471 61.8
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 1.3e-151 540.4 448 63.8
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 5.1e-151 538.5 428 66.1
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.8e-149 532.7 469 60.6
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 2.2e-146 523.1 429 63.2
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 3.8e-146 522.3 436 64.2
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 4.9e-146 521.9 430 61.4
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.9e-145 520.0 446 59.2
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 8.7e-143 511.1 434 60.1
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.2e-141 506.5 461 58.4
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 2.2e-141 506.5 430 62.1
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 4.8e-141 505.4 449 60.6
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 7.7e-139 498.0 450 59.3
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 5.0e-138 495.4 454 54.8
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 6.5e-138 495.0 423 57.0
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.1e-137 494.2 463 54.0
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.9e-137 493.4 426 59.9
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 4.2e-137 492.3 441 56.5
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 9.4e-137 491.1 434 58.5
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.2e-136 490.7 479 55.7
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 2.7e-136 489.6 455 58.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 3.6e-136 489.2 429 59.2
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.0e-135 486.1 496 55.0
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 6.7e-135 485.0 427 60.2
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 8.8e-135 484.6 438 58.4
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.1e-134 484.2 455 57.1
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 2.0e-134 483.4 324 74.1
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 3.3e-134 482.6 428 60.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 4.3e-134 482.3 462 54.8
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 4.3e-134 482.3 317 74.4
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.3e-133 480.7 445 55.7
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.3e-133 480.7 445 55.7
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 2.8e-133 479.6 425 60.5
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 3.7e-133 479.2 478 54.0
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 2.4e-132 476.5 426 56.1
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 2.6e-131 473.0 293 78.8
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.9e-130 469.5 492 51.4
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 3.8e-130 469.2 434 57.8
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 8.5e-130 468.0 455 55.2
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.4e-129 467.2 437 56.5
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 1.4e-129 467.2 429 54.8
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 9.4e-129 464.5 443 56.9
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.2e-128 464.2 441 56.9
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.1e-128 463.4 472 53.2
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.1e-128 463.4 443 57.3
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 2.7e-128 463.0 433 57.3
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 6.1e-128 461.8 455 54.7
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 7.9e-128 461.5 440 56.6
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 7.9e-128 461.5 437 58.8
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.8e-127 460.3 465 54.0
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 5.1e-127 458.8 435 55.2
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 6.7e-127 458.4 452 53.8
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.7e-127 458.4 466 52.1
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.5e-126 457.2 443 56.4
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 2.0e-126 456.8 452 53.3
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 2.6e-126 456.4 454 53.3
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.4e-126 455.7 531 50.1
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 4.4e-126 455.7 446 56.5
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 7.4e-126 454.9 446 53.8
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.7e-125 453.8 499 51.3
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 4.1e-124 449.1 464 52.6
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 7.0e-124 448.4 443 53.7
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 9.1e-124 448.0 438 54.1
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.6e-123 446.4 518 48.1
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 3.5e-123 446.0 521 48.9
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 7.7e-123 444.9 443 53.5
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.1e-121 441.0 450 51.6
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 1.9e-121 440.3 536 48.5
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 3.2e-121 439.5 497 50.3
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.2e-120 437.6 463 48.8
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 1.8e-119 433.7 559 45.3
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.8e-119 433.7 487 50.5
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 6.7e-119 431.8 499 46.5
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.1e-118 431.0 438 52.3
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 4.4e-118 429.1 527 47.1
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.4e-116 423.3 466 51.3
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 4.1e-116 422.5 429 55.0
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.5e-115 419.5 434 50.7
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 5.9e-115 418.7 435 50.3
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.4e-111 407.5 417 50.1
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.8e-111 405.2 515 44.7
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.2e-109 400.2 347 57.1
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 5.4e-108 395.6 265 66.8
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 3.8e-106 389.4 263 68.1
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 6.8e-103 378.6 423 48.7
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 3.4e-102 376.3 262 69.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 9.8e-102 374.8 518 41.9
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 2.8e-101 373.2 306 61.4
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.4e-100 370.9 285 64.6
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 4.1e-100 369.4 266 62.0
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 7.0e-100 368.6 265 63.0
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 3.5e-99 366.3 269 65.4
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 8.6e-98 361.7 546 40.8
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.3e-95 353.6 276 62.3
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.4e-94 349.7 262 61.1
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 9.8e-94 348.2 263 64.6
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.9e-93 346.7 262 59.5
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 1.4e-92 344.4 231 70.6
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.3e-90 337.8 262 59.2
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.5e-89 333.6 266 59.8
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.3e-87 327.0 250 61.2
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.1e-81 308.1 195 73.3
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 7.3e-81 305.4 279 53.0
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 6.8e-79 298.9 264 55.3
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.0e-78 297.4 264 57.2
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.5e-73 278.5 304 48.7
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.8e-72 276.9 296 49.0
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.1e-72 275.4 177 71.8
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 3.7e-69 266.5 191 62.8
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.8e-59 232.3 252 48.0
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.9e-57 227.6 267 46.4
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 5.8e-54 216.1 137 73.7
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 2.2e-53 214.2 266 43.2
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.9e-53 213.0 267 44.2
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 8.4e-53 212.2 136 71.3
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 3.5e-51 206.8 178 56.2
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 1.4e-47 194.9 261 47.1
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 9.0e-47 192.2 253 43.1
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 3.4e-46 190.3 137 65.0
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.1e-44 185.3 220 48.6
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.0e-42 178.7 103 76.7
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 6.7e-42 176.0 285 37.5
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 2.1e-40 171.0 236 47.9
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.9e-36 157.9 290 35.2
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 6.0e-35 152.9 287 35.5
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.6e-33 145.6 185 45.4
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 2.7e-27 127.5 98 60.2
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.7e-25 119.8 122 48.4
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 9.7e-25 119.0 193 45.1
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.3e-24 118.6 280 30.0
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.3e-24 118.6 75 74.7
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 5.5e-20 103.2 255 27.5
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 4.3e-17 93.6 111 49.5
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.2e-12 77.0 207 27.5
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 3.6e-11 73.9 146 39.0
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 5.1e-10 70.1 62 51.6
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 8.8e-10 69.3 66 47.0
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.8e-08 64.3 62 48.4
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.3e-07 60.1 36 66.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 7.0e-07 59.7 104 33.7


User provided reference genes

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