Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022512 Lotus japonicus HOM05D007010 ORTHO05D008591 3.6e-48 194.9 122 100.0
Glyma.07G198700 Glycine max HOM05D007010 ORTHO05D008591 3.3e-33 145.2 129 62.0
Lj5g0011556 Lotus japonicus HOM05D007010 ORTHO05D008591 2.8e-32 142.1 130 68.5
Ca_18571_v3 Cicer arietinum L. HOM05D007010 ORTHO05D008591 8.1e-32 140.6 128 64.8
VMungo0251G3434 Vigna mungo HOM05D007010 ORTHO05D008591 2.6e-30 135.6 132 72.0
Glyma.13G177700 Glycine max HOM05D007010 ORTHO05D008591 1.3e-29 133.3 125 70.4
Phvul.002G230000 Phaseolus vulgaris HOM05D007010 ORTHO05D008591 3.8e-29 131.7 129 55.0
Lalb_Chr05g0218511 Lupinus albus HOM05D007010 ORTHO05D008591 1.4e-28 129.8 127 56.7
Medtr4g088585 Medicago truncatula HOM05D007010 ORTHO05D008591 1.4e-28 129.8 124 58.1
TPR.G16317 Trifolium pratense HOM05D007010 ORTHO05D008591 7.1e-28 127.5 127 55.9
Psat7g115760 Pisum sativum HOM05D007010 ORTHO05D008591 2.1e-27 125.9 128 55.5
Cpa.g.sc7.196 Carica papaya HOM05D007010 ORTHO05D008591 1.3e-24 116.7 127 65.4
Hma1.2p1_0450F.1_g155640 Hydrangea macrophylla HOM05D007010 ORTHO05D008591 1.4e-23 113.2 126 50.8
Potri.018G056000 Populus trichocarpa HOM05D007010 ORTHO05D008591 1.2e-22 110.2 128 51.6
Ciclev10009901m.g Citrus clementina HOM05D007010 ORTHO05D008591 1.5e-22 109.8 128 50.0
TWI63G1421 Tripterygium wilfordii HOM05D007010 ORTHO05D008591 1.5e-22 109.8 126 48.4
Eucgr.C02362 Eucalyptus grandis HOM05D007010 ORTHO05D008591 1.3e-21 106.7 125 50.4
Lj7P280T30 Lonicera japonica HOM05D007010 ORTHO05D008591 2.2e-21 105.9 126 50.8
Thecc.09G051700 Theobroma cacao HOM05D007010 ORTHO05D008591 8.4e-21 104.0 132 47.7
CANSAT56G1710 Cannabis sativa HOM05D007010 ORTHO05D008591 1.1e-20 103.6 129 49.6
FvH4_2g32140 Fragaria vesca HOM05D007010 ORTHO05D008591 1.1e-20 103.6 137 58.4
Atru.chr1.3280 Acer truncatum HOM05D007010 ORTHO05D008591 1.9e-20 102.8 127 47.2
FAN24G3148 Fragaria x ananassa HOM05D007010 ORTHO05D008591 1.9e-20 102.8 137 58.4
TAR383G0702 Trochodendron aralioides HOM05D007010 ORTHO05D008591 9.3e-20 100.5 125 57.6
Atru.chr7.2115 Acer truncatum HOM05D007010 ORTHO05D008591 2.1e-19 99.4 141 43.3
Ca_08538_v3 Cicer arietinum L. HOM05D007010 ORTHO05D008591 2.1e-19 99.4 109 59.6
QL05p001142 Quercus lobata HOM05D007010 ORTHO05D008591 4.6e-19 98.2 91 56.0
SalBow7G3522 Salvia bowleyana HOM05D007010 ORTHO05D008591 1.7e-18 96.3 129 48.8
Sed0004842 Sechium edule HOM05D007010 ORTHO05D008591 2.3e-18 95.9 142 43.0
TAR497G0007 Trochodendron aralioides HOM05D007010 ORTHO05D008591 2.3e-18 95.9 123 45.5
Haze_03853 Corylus avellana HOM05D007010 ORTHO05D008591 3.9e-18 95.1 92 54.3
Sc09g0009690 Simmondsia chinensis HOM05D007010 ORTHO05D008591 8.7e-18 94.0 124 47.6
Gohir.A06G087901 Gossypium hirsutum HOM05D007010 ORTHO05D008591 1.9e-17 92.8 129 44.2
Potri.006G232200 Populus trichocarpa HOM05D007010 ORTHO05D008591 2.5e-17 92.4 125 47.2
Solyc12g095940.1 Solanum lycopersicum HOM05D007010 ORTHO05D008591 2.5e-17 92.4 129 45.0
Sopen12g031840 Solanum pennellii HOM05D007010 ORTHO05D008591 2.5e-17 92.4 129 45.0
Nn8g38932 Nelumbo nucifera HOM05D007010 ORTHO05D008591 3.3e-17 92.0 121 47.1
Nn8g38936 Nelumbo nucifera HOM05D007010 ORTHO05D008591 3.3e-17 92.0 121 47.1
Manes.03G046700 Manihot esculenta HOM05D007010 ORTHO05D008591 4.3e-17 91.7 141 47.5
Sp7g31830 Schrenkiella parvula HOM05D007010 ORTHO05D008591 7.3e-17 90.9 119 43.7
QL05p000846 Quercus lobata HOM05D007010 ORTHO05D008591 1.3e-16 90.1 179 36.9
CsaV3_4G035530 Cucumis sativus L. HOM05D007010 ORTHO05D008591 1.6e-16 89.7 141 41.1
Prupe.1G414500 Prunus persica HOM05D007010 ORTHO05D008591 1.6e-16 89.7 168 48.8
CAN.G208.75 Capsicum annuum HOM05D007010 ORTHO05D008591 2.8e-16 89.0 125 44.8
Gohir.D06G088700 Gossypium hirsutum HOM05D007010 ORTHO05D008591 2.8e-16 89.0 129 43.4
THA.LOC104811249 Tarenaya hassleriana HOM05D007010 ORTHO05D008591 3.6e-16 88.6 129 50.4
Cfa017938 Carpinus fangiana HOM05D007010 ORTHO05D008591 4.8e-16 88.2 125 60.8
Duzib168G1521 Durio zibethinus HOM05D007010 ORTHO05D008591 4.8e-16 88.2 98 62.2
Oeu018653.1 Olea europaea HOM05D007010 ORTHO05D008591 4.8e-16 88.2 135 43.0
Oeu037327.1 Olea europaea HOM05D007010 ORTHO05D008591 4.8e-16 88.2 132 42.4
Hund03353 Selenicereus undatus HOM05D007010 ORTHO05D008591 6.2e-16 87.8 122 45.1
PGSC0003DMG400029388 Solanum tuberosum HOM05D007010 ORTHO05D008591 6.2e-16 87.8 123 43.9
FAN27G2071 Fragaria x ananassa HOM05D007010 ORTHO05D008591 1.1e-15 87.0 126 59.5
SalBow2G0398 Salvia bowleyana HOM05D007010 ORTHO05D008591 1.4e-15 86.7 125 44.8
SalBow2G1284 Salvia bowleyana HOM05D007010 ORTHO05D008591 1.4e-15 86.7 125 44.8
Dinv27969 Davidia involucrata HOM05D007010 ORTHO05D008591 2.4e-15 85.9 112 47.3
SGA_v2.0_scaffold52G19071 Striga asiatica HOM05D007010 ORTHO05D008591 4.0e-15 85.1 132 41.7
Thhalv10014970m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 5.3e-15 84.7 136 51.5
HanXRQChr13g0410661 Helianthus annuus HOM05D007010 ORTHO05D008591 6.9e-15 84.3 132 53.0
MD08G1044600 Malus domestica HOM05D007010 ORTHO05D008591 2.0e-14 82.8 155 46.5
Nn8g38933 Nelumbo nucifera HOM05D007010 ORTHO05D008591 2.0e-14 82.8 117 45.3
Dinv23425 Davidia involucrata HOM05D000575 ORTHO05D004448 2.6e-14 82.4 111 45.9
PSO478G3947 Papaver somniferum HOM05D007010 ORTHO05D008591 2.6e-14 82.4 109 58.7
Migut.L00284 Erythranthe guttata HOM05D007010 ORTHO05D008591 4.5e-14 81.6 150 38.0
Sp6g31840 Schrenkiella parvula HOM05D007010 ORTHO05D008591 5.8e-14 81.3 122 42.6
FAN20G1932 Fragaria x ananassa HOM05D007010 ORTHO05D008591 7.6e-14 80.9 126 53.2
ECA240G3686 Erigeron canadensis HOM05D007010 ORTHO05D008591 1.7e-13 79.7 144 37.5
PGR044G1826 Punica granatum HOM05D007010 ORTHO05D008591 1.7e-13 79.7 138 47.1
vmacro00158 Vaccinium macrocarpon HOM05D007010 ORTHO05D008591 1.7e-13 79.7 111 46.8
MD15G1061800 Malus domestica HOM05D007010 ORTHO05D008591 2.2e-13 79.3 156 41.0
Sabra06G0180200 Salix brachista HOM05D007010 ORTHO05D008591 2.2e-13 79.3 112 44.6
Haze_18208 Corylus avellana HOM05D007010 ORTHO05D008591 6.4e-13 77.8 111 55.9
ClCG05G017750 Citrullus lanatus HOM05D007010 ORTHO05D008591 8.4e-13 77.4 94 47.9
ATR0697G019 Amborella trichopoda HOM05D007010 ORTHO05D008591 1.4e-12 76.6 49 67.3
Aa31LG3G15440 Aethionema arabicum HOM05D007010 ORTHO05D008591 3.2e-12 75.5 131 35.9
Sabra06G0180800 Salix brachista HOM05D007010 ORTHO05D008591 7.1e-12 74.3 126 44.4
Rhsim11G0045900 Rhododendron simsii HOM05D007010 ORTHO05D008591 9.3e-12 73.9 112 43.8
Pp3c2_14930 Physcomitrium patens HOM05D007010 ORTHO05D008591 2.1e-11 72.8 129 34.9
RcHm_v2.0_Chr6g0310541 Rosa chinensis HOM05D007010 ORTHO05D008591 2.1e-11 72.8 137 51.8
MBI06_g20720_MAGBIO Magnolia biondii HOM05D007010 ORTHO05D008591 2.7e-11 72.4 135 41.5
Aqoxy3G02885 Aquilegia oxysepala HOM05D007010 ORTHO05D008591 3.5e-11 72.0 40 72.5
BcaB03g11855 Brassica carinata HOM05D007010 ORTHO05D008591 1.0e-10 70.5 39 71.8
A08p17130 Brassica napus HOM05D007010 ORTHO05D008591 1.0e-10 70.5 39 71.8
BraA08t33674Z Brassica rapa HOM05D007010 ORTHO05D008591 1.0e-10 70.5 39 71.8
Lsat_1_v5_gn_9_89520 Lactuca sativa HOM05D007010 ORTHO05D008591 1.3e-10 70.1 142 37.3
AUR62009172 Chenopodium quinoa HOM05D007010 ORTHO05D008591 2.3e-10 69.3 89 50.6
Thhalv10027214m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 2.3e-10 69.3 124 37.1
Nitab4.5_0011306g0020 Nicotiana tabacum HOM05D007010 ORTHO05D008591 2.3e-10 69.3 115 43.5
Zm00001eb054150 Zea mays HOM05D007010 ORTHO05D008591 2.3e-10 69.3 39 69.2
AT5G11760 Arabidopsis thaliana HOM05D007010 ORTHO05D008591 3.0e-10 68.9 41 68.3
FAN15G0823 Fragaria x ananassa HOM05D007010 ORTHO05D008591 3.0e-10 68.9 118 58.5
SEGI_19332 Sequoiadendron giganteum HOM05D007010 ORTHO05D008591 3.0e-10 68.9 127 36.2
FAN10G4050 Fragaria x ananassa HOM05D007010 ORTHO05D008591 8.7e-10 67.4 129 52.7
Mapoly0094s0032 Marchantia polymorpha HOM05D007010 ORTHO05D008591 1.1e-09 67.0 108 38.9
CARHR201450 Cardamine hirsuta HOM05D007010 ORTHO05D008591 2.5e-09 65.9 40 65.0
CiPaw.15G041400 Carya illinoinensis HOM05D007010 ORTHO05D008591 2.5e-09 65.9 111 39.6
Nitab4.5_0000738g0150 Nicotiana tabacum HOM05D007010 ORTHO05D008591 3.3e-09 65.5 117 46.2
BcaC01g00931 Brassica carinata HOM05D007010 ORTHO05D008591 1.3e-08 63.5 155 33.5
C03p86090 Brassica napus HOM05D007010 ORTHO05D008591 1.3e-08 63.5 155 33.5
BolC3t20897H Brassica oleracea HOM05D007010 ORTHO05D008591 1.3e-08 63.5 155 33.5
Gorai.010G102500 Gossypium raimondii HOM05D007010 ORTHO05D008591 1.3e-08 63.5 115 39.1
CBR_g70706 Chara braunii HOM05D007010 ORTHO05D008591 2.8e-08 62.4 38 63.2
Aa31LG8G6820 Aethionema arabicum HOM05D007010 ORTHO05D008591 3.7e-08 62.0 134 50.0
Cre09.g395325 Chlamydomonas reinhardtii HOM05D007010 ORTHO05D008591 1.1e-07 60.5 49 53.1
TAR636G2520 Trochodendron aralioides HOM05D007010 ORTHO05D008591 2.4e-07 59.3 113 36.3
Carub.0006s1029 Capsella rubella HOM05D007010 ORTHO05D008591 9.0e-07 57.4 33 63.6
AL6G22510 Arabidopsis lyrata HOM05D007010 ORTHO05D008591 1.5e-06 56.6 33 63.6
arahy.Tifrunner.gnm1.ann1.895WNU Arachis hypogaea HOM05D043745 ORTHO05D008591 1.5e-06 56.6 33 72.7
arahy.Tifrunner.gnm1.ann1.L1Q7MY Arachis hypogaea HOM05D043745 ORTHO05D008591 1.5e-06 56.6 33 72.7


User provided reference genes

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