Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 5.0e-191 671.0 354 100.0
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 6.9e-100 368.2 250 74.4
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 5.3e-92 342.0 231 74.9
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 6.1e-88 328.6 231 73.6
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 6.7e-87 325.1 227 69.2
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 6.7e-87 325.1 227 69.6
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 1.1e-86 324.3 233 70.0
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.3e-85 320.9 231 70.6
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 6.3e-85 318.5 227 69.6
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 3.4e-83 312.8 236 69.5
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.3e-82 310.8 231 68.4
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 4.1e-76 289.3 226 62.8
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.6e-75 287.3 231 63.6
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 2.2e-74 283.5 249 58.6
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 6.5e-74 282.0 226 62.8
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 4.2e-73 279.3 218 61.9
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 3.6e-72 276.2 252 59.1
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 6.1e-72 275.4 225 60.4
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 1.8e-71 273.9 227 59.0
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 2.3e-71 273.5 227 59.5
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 3.0e-71 273.1 236 58.5
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 1.5e-70 270.8 228 57.9
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 4.4e-70 269.2 225 60.4
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 5.7e-70 268.9 236 57.6
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 1.3e-69 267.7 236 57.2
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 1.7e-69 267.3 226 59.7
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 6.3e-69 265.4 222 59.0
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 1.1e-68 264.6 231 60.2
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 1.1e-68 264.6 229 59.4
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 1.8e-68 263.8 228 59.2
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 1.6e-67 260.8 263 54.0
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 2.0e-67 260.4 223 58.7
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.5e-67 259.6 222 58.6
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 4.5e-67 259.2 263 53.6
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 5.9e-67 258.8 249 55.8
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 2.2e-66 256.9 244 56.6
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.9e-66 256.5 243 56.8
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 5.0e-66 255.8 227 56.4
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 6.5e-66 255.4 231 59.7
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 8.5e-66 255.0 224 57.6
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 1.9e-65 253.8 233 55.8
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 3.2e-65 253.1 222 57.2
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.2e-65 252.7 243 55.6
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 5.5e-65 252.3 222 57.2
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 5.5e-65 252.3 231 58.4
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 9.4e-65 251.5 210 57.1
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.7e-64 250.0 243 55.1
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 3.6e-64 249.6 231 57.6
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 4.7e-64 249.2 223 54.3
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 4.7e-64 249.2 222 57.2
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.0e-63 248.1 224 56.7
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 1.8e-63 247.3 222 58.1
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 1.8e-63 247.3 222 58.1
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 2.3e-63 246.9 229 53.3
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.0e-63 246.1 244 54.1
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 8.8e-63 245.0 222 56.8
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 8.8e-63 245.0 222 57.2
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 8.8e-63 245.0 225 55.1
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.0e-62 243.8 229 52.4
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 4.4e-62 242.7 222 55.4
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 9.8e-62 241.5 229 51.5
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 2.8e-61 240.0 229 53.3
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 4.8e-61 239.2 229 51.5
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 4.8e-61 239.2 229 51.5
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 4.8e-61 239.2 229 51.5
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 1.4e-60 237.7 229 53.3
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 1.4e-60 237.7 229 54.1
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 3.1e-60 236.5 229 52.8
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 7.0e-60 235.3 230 51.7
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 9.1e-60 235.0 210 53.8
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 2.0e-59 233.8 201 57.7
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 7.7e-59 231.9 257 49.8
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 5.5e-57 225.7 202 58.4
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 7.2e-57 225.3 251 47.0
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 1.0e-55 221.5 222 51.4
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 1.0e-55 221.5 162 66.7
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 2.6e-54 216.9 214 50.0
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 5.7e-54 215.7 226 53.5
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 9.8e-54 214.9 208 51.0
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 3.7e-53 213.0 229 50.2
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 8.3e-53 211.8 315 41.3
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 1.4e-47 194.5 228 46.9
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 1.8e-47 194.1 222 49.5
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.4e-44 184.5 263 41.4
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 9.2e-44 181.8 162 56.8
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 1.1e-41 174.9 139 60.4
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 7.3e-41 172.2 105 76.2
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 7.3e-41 172.2 135 60.0
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 3.6e-40 169.9 105 74.3
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 4.9e-37 159.5 222 45.0
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 3.5e-35 153.3 116 59.5
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 1.9e-33 147.5 194 40.7
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 2.1e-32 144.1 217 40.1
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 2.3e-31 140.6 277 37.5
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 2.7e-27 127.1 154 44.2
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 1.6e-24 117.9 229 32.8
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 3.6e-24 116.7 103 52.4
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 4.0e-23 113.2 135 45.2
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 6.0e-19 99.4 109 47.7
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 1.1e-17 95.1 102 50.0
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 3.3e-17 93.6 70 65.7
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 4.3e-17 93.2 89 47.2
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 1.6e-16 91.3 102 52.9
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 4.7e-16 89.7 98 42.9
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.5e-14 84.7 192 29.2
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 9.9e-14 82.0 208 26.9
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 4.2e-12 76.6 96 45.8
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 6.6e-10 69.3 125 38.4
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 6.6e-10 69.3 125 38.4
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 4.8e-08 63.2 94 39.4
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 3.4e-06 57.0 94 36.2


User provided reference genes

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