Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 4.7e-277 957.2 475 100.0
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 4.4e-251 870.9 475 90.3
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.2e-248 862.8 475 89.7
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.7e-247 859.0 475 89.1
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.5e-246 855.9 475 89.1
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.1e-244 849.7 475 88.2
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.1e-244 849.7 480 87.7
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.4e-244 849.4 475 89.1
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 3.6e-237 824.7 480 84.6
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 7.6e-235 817.0 484 83.1
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-234 815.8 483 82.6
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.9e-234 815.1 496 81.5
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.6e-229 799.3 479 83.1
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.6e-227 792.0 478 79.9
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.6e-227 792.0 478 79.9
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 2.9e-226 788.5 516 76.7
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.0e-223 780.0 479 78.3
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 8.7e-223 776.9 479 78.5
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 2.4e-220 768.8 506 74.3
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 4.9e-218 761.1 477 81.8
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 4.9e-218 761.1 479 76.6
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.9e-217 759.2 479 76.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 5.4e-217 757.7 479 76.2
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.3e-215 753.1 481 75.9
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 8.7e-215 750.4 479 74.3
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 2.8e-213 745.3 479 75.4
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.8e-213 745.3 432 85.2
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 3.6e-213 745.0 490 74.9
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.1e-212 743.4 480 77.1
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.0e-211 739.2 479 74.7
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 7.6e-211 737.3 477 74.4
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 7.6e-211 737.3 483 74.5
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 9.9e-211 736.9 485 74.4
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.3e-210 736.5 477 74.8
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.2e-210 735.7 477 74.0
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 3.8e-210 734.9 478 73.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 6.4e-210 734.2 477 73.8
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 8.4e-210 733.8 479 73.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.4e-209 732.3 479 73.7
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 4.2e-209 731.5 477 73.6
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 4.6e-208 728.0 480 75.2
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 7.9e-208 727.2 477 74.2
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.3e-207 726.5 482 72.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.5e-206 723.0 477 73.8
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 9.6e-206 720.3 477 73.6
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.4e-204 716.5 484 72.9
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.4e-204 716.5 485 71.5
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 6.9e-204 714.1 492 70.9
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.2e-203 713.4 480 71.0
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.4e-203 711.8 484 72.7
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.5e-203 711.4 485 72.6
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.3e-202 709.9 481 71.9
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.9e-202 708.8 482 71.6
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.8e-202 708.4 482 72.2
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 3.8e-202 708.4 483 71.6
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 4.2e-201 704.9 478 70.9
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 4.2e-201 704.9 481 70.7
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.1e-201 704.1 484 72.3
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 7.9e-200 700.7 475 72.4
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.0e-199 700.3 483 71.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.8e-199 699.5 480 71.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.3e-199 699.1 481 71.1
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 5.1e-199 698.0 479 70.8
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 5.1e-199 698.0 480 70.6
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.5e-198 696.4 480 69.8
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 3.3e-198 695.3 475 70.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 5.7e-198 694.5 480 70.4
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.8e-197 691.4 475 70.7
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 5.3e-196 688.0 480 69.6
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 6.9e-196 687.6 476 71.8
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 6.9e-196 687.6 475 70.7
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.0e-195 686.0 484 69.8
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 4.5e-195 684.9 482 70.3
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 2.2e-194 682.6 475 69.3
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 3.8e-194 681.8 480 69.2
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 3.8e-194 681.8 434 73.5
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 4.2e-193 678.3 481 68.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.2e-192 676.8 507 66.1
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.1e-192 676.0 481 68.8
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 4.6e-192 674.9 480 68.8
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.3e-191 673.3 475 68.2
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.3e-191 672.5 481 68.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.3e-191 672.5 475 69.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 5.1e-191 671.4 481 68.4
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.5e-190 669.8 488 69.1
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 4.3e-190 668.3 481 68.0
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 4.3e-190 668.3 454 72.0
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 7.4e-190 667.5 481 68.0
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 7.4e-190 667.5 570 60.5
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 9.7e-190 667.2 487 68.6
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.6e-189 666.4 481 68.2
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.7e-189 665.2 415 75.7
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 3.7e-189 665.2 495 66.1
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 6.3e-189 664.5 475 69.3
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.4e-188 663.3 486 66.7
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.4e-188 663.3 481 68.0
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.4e-188 663.3 481 68.0
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.2e-186 656.0 475 66.9
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 3.8e-186 655.2 505 65.0
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 5.5e-185 651.4 465 70.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.1e-184 649.4 498 65.5
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.8e-183 646.4 481 66.1
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 3.0e-183 645.6 480 64.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.4e-180 636.7 480 63.1
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.8e-180 636.3 481 63.4
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.2e-179 633.6 430 71.9
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 2.1e-176 622.9 514 62.6
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.0e-175 619.0 415 71.8
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.2e-170 602.8 476 62.4
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.5e-169 600.1 559 58.3
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.5e-169 599.4 481 62.2
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.2e-169 598.6 486 60.9
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.0e-167 594.0 490 61.0
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 3.7e-165 585.5 476 59.2
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 6.5e-162 574.7 425 68.2
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.3e-149 531.6 413 64.9
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 8.6e-146 521.2 358 72.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 9.8e-142 507.7 497 55.3
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 2.3e-138 496.5 480 55.4
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.6e-99 367.5 251 67.7
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.7e-99 366.7 597 37.9
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.5e-97 360.1 527 44.0
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.2e-92 343.2 256 66.4
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.3e-82 311.2 211 74.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-78 298.1 221 62.9
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.0e-77 295.0 182 70.9
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.9e-76 290.8 550 36.7
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.8e-72 276.9 250 55.2
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.1e-71 275.0 378 44.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-68 263.5 432 40.5
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 4.2e-68 263.1 181 76.8
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.0e-62 244.2 175 64.6
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.0e-61 241.9 266 50.0
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 9.7e-57 225.3 488 33.8
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.2e-48 197.6 170 58.8
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.7e-46 190.7 212 53.8
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.1e-44 185.3 388 34.0
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.5e-38 163.3 451 27.1
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.1e-36 158.7 453 27.2
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 5.4e-31 139.8 223 36.3
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.5e-28 131.7 183 50.8
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.3e-21 108.6 62 88.7
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 7.3e-20 102.8 65 83.1
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 5.2e-18 96.7 63 73.0
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.4e-17 94.0 106 48.1
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.7e-16 91.7 65 72.3
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-15 89.0 256 27.0
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-11 75.5 70 54.3
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.0e-10 70.5 69 56.5
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 1.5e-09 68.6 68 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.7e-08 63.9 83 48.2


User provided reference genes

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