Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 4.8e-191 671.0 338 100.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 8.0e-138 494.2 339 73.7
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.8e-135 485.7 339 72.3
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.4e-134 482.6 339 72.0
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 6.5e-132 474.6 330 73.3
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.9e-131 473.0 341 71.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 7.2e-131 471.1 341 71.6
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 6.1e-130 468.0 339 69.9
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 8.0e-130 467.6 339 69.6
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.3e-124 449.5 339 67.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.8e-124 448.7 339 68.1
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.2e-122 443.7 339 66.4
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 3.6e-122 442.2 338 67.2
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 5.7e-120 434.9 339 65.2
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.9e-119 431.8 338 65.1
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.1e-113 412.5 340 62.6
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.0e-109 398.3 338 60.7
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 8.6e-108 394.4 340 58.8
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.1e-107 394.0 350 57.7
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 7.3e-107 391.3 339 59.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 2.8e-106 389.4 342 59.1
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 4.7e-106 388.7 340 57.6
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 4.0e-105 385.6 339 59.3
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 3.7e-103 379.0 338 59.2
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.2e-101 374.0 342 59.9
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 7.8e-101 371.3 338 58.0
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 2.3e-100 369.8 343 56.3
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 2.3e-100 369.8 345 56.5
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 8.9e-97 357.8 344 53.2
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.2e-96 357.5 343 55.4
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.0e-96 356.7 340 55.6
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.4e-96 355.9 340 55.3
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 9.9e-96 354.4 345 55.4
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.3e-95 354.0 341 54.0
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 6.4e-95 351.7 344 55.2
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.4e-94 350.5 341 55.4
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.9e-94 350.1 299 60.5
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.6e-93 347.1 344 53.2
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 3.5e-93 345.9 344 54.4
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.0e-93 345.1 343 54.8
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.3e-92 343.2 344 53.8
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.0e-92 342.8 344 56.1
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 3.9e-92 342.4 345 52.8
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.9e-92 342.4 340 53.2
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.6e-92 341.7 343 54.5
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.5e-91 339.7 346 54.6
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 8.1e-90 334.7 343 53.4
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.8e-89 333.6 344 51.5
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 3.1e-89 332.8 336 51.8
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 4.0e-89 332.4 356 52.8
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.4e-88 328.9 344 51.2
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 5.8e-88 328.6 344 50.9
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.8e-87 325.9 344 50.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.4e-86 323.9 342 52.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.4e-86 323.9 343 52.2
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 3.2e-86 322.8 344 54.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.2e-85 320.9 342 52.0
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.6e-85 318.9 342 50.3
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 4.6e-85 318.9 340 51.2
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.3e-84 317.4 345 51.6
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 9.6e-83 311.2 342 50.0
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.6e-82 310.5 344 46.8
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.6e-82 310.5 352 52.3
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.2e-82 308.5 315 52.1
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.4e-81 307.4 344 46.8
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 6.9e-81 305.1 340 50.6
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.5e-80 303.9 315 52.4
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.0e-80 303.5 341 49.3
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.0e-80 303.5 341 49.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 2.6e-80 303.1 346 47.1
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 9.9e-80 301.2 343 49.6
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.2e-79 300.1 346 46.8
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.2e-79 300.1 348 48.3
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.8e-79 299.3 342 48.2
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 8.4e-79 298.1 343 48.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.4e-78 297.4 322 50.9
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.4e-78 297.4 343 47.2
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.9e-78 297.0 344 45.3
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 2.4e-78 296.6 346 46.5
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.4e-78 296.6 343 49.0
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.2e-78 295.8 337 47.2
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 7.1e-78 295.0 343 49.6
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 9.3e-78 294.7 309 53.7
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.0e-76 291.2 343 48.7
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.3e-76 290.8 344 44.8
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.8e-76 290.4 347 46.1
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 2.3e-76 290.0 352 48.6
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 3.9e-76 289.3 346 46.2
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.5e-75 287.3 346 45.4
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.9e-75 287.0 327 47.7
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.9e-75 287.0 355 48.2
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 2.5e-75 286.6 340 48.2
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.3e-75 286.2 343 45.8
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 3.3e-75 286.2 343 46.1
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 5.6e-75 285.4 326 48.2
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 5.6e-75 285.4 346 46.8
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.6e-75 284.6 351 48.7
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.6e-74 283.9 338 47.3
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.1e-74 283.5 326 47.9
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.4e-73 280.8 326 47.2
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 2.0e-72 276.9 340 47.4
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.2e-70 269.2 328 44.5
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.2e-69 267.7 342 44.2
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.6e-69 267.3 344 44.5
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 7.9e-69 265.0 296 49.0
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.9e-67 260.4 329 45.0
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.5e-67 260.0 308 48.1
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.3e-67 259.6 285 50.2
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.3e-67 259.6 346 41.9
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 9.6e-67 258.1 345 44.1
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.3e-66 257.7 307 46.6
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.1e-66 256.9 330 46.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.1e-65 253.1 323 45.2
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.1e-65 253.1 259 54.4
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 7.6e-64 248.4 328 43.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.7e-63 247.3 349 44.7
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.7e-63 247.3 296 44.6
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.9e-63 246.5 341 41.3
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 4.9e-63 245.7 342 41.5
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 6.5e-63 245.4 309 45.3
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 8.4e-63 245.0 338 40.8
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 4.2e-62 242.7 347 42.4
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 7.1e-62 241.9 347 42.4
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.0e-60 236.5 337 43.0
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 3.3e-59 233.0 278 46.4
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 5.7e-59 232.3 340 39.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 5.7e-59 232.3 344 40.4
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.3e-58 231.1 337 40.9
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 6.9e-57 225.3 284 46.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.5e-56 224.2 347 40.3
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 4.2e-54 216.1 347 39.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.7e-53 213.4 279 41.6
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 2.2e-50 203.8 198 52.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.4e-49 201.1 138 68.1
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-46 191.4 138 65.9
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.6e-45 186.4 307 37.5
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.9e-45 185.3 130 66.2
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.7e-44 182.2 341 34.3
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-43 180.6 337 37.4
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 2.6e-43 180.3 306 38.9
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.7e-42 176.4 242 39.3
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.4e-41 173.7 209 41.6
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 5.9e-32 142.5 278 34.5
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 5.0e-31 139.4 320 32.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.3e-28 130.6 99 61.6
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 5.4e-17 92.8 133 44.4
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 4.1e-09 66.6 292 27.7
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.9e-06 57.8 39 69.2


User provided reference genes

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