Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 4.6e-194 681.0 336 100.0
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 1.2e-146 523.5 349 76.5
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 5.1e-145 518.1 343 76.7
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.1e-144 516.9 343 75.8
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 5.3e-142 508.1 324 79.3
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.0e-141 506.1 320 79.1
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.4e-139 500.0 348 73.3
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 3.2e-139 498.8 316 77.8
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.2e-133 480.3 387 65.9
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 8.2e-127 457.6 340 67.9
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 9.1e-126 454.1 342 67.5
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 2.6e-125 452.6 344 65.7
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.7e-124 449.9 347 65.7
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 2.9e-124 449.1 351 65.8
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 3.8e-124 448.7 344 65.4
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 1.9e-123 446.4 331 65.9
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.9e-123 446.4 347 65.1
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 1.9e-123 446.4 348 65.2
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 6.1e-122 441.4 340 65.0
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 1.4e-121 440.3 345 63.8
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 5.2e-121 438.3 346 64.2
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 3.3e-120 435.6 311 66.9
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.1e-118 429.1 305 68.5
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 4.1e-118 428.7 350 63.4
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 2.9e-116 422.5 397 56.4
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.0e-113 414.1 349 61.0
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 1.4e-113 413.7 303 65.3
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.8e-113 413.3 302 64.9
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 8.8e-113 411.0 327 62.7
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 3.4e-112 409.1 332 62.3
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.4e-112 409.1 355 60.6
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 4.8e-111 405.2 313 63.3
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 6.3e-111 404.8 322 61.8
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 8.3e-111 404.4 317 63.4
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 8.3e-111 404.4 400 54.2
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 8.3e-111 404.4 346 61.3
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 2.0e-109 399.8 368 57.6
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 4.5e-109 398.7 402 54.7
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 4.5e-109 398.7 402 54.7
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 7.7e-109 397.9 353 61.8
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.2e-107 392.1 267 70.8
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 7.2e-107 391.3 255 73.3
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 9.5e-107 391.0 286 66.1
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 9.5e-107 391.0 338 58.9
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 2.8e-106 389.4 328 59.5
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.8e-105 386.7 376 55.1
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.4e-104 382.5 311 62.1
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 5.7e-104 381.7 364 55.2
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 2.8e-103 379.4 306 61.8
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 4.9e-103 378.6 339 59.0
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 8.3e-103 377.9 300 61.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.4e-102 377.1 234 80.8
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 5.9e-101 371.7 312 61.9
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 7.8e-101 371.3 319 59.9
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 7.8e-101 371.3 319 59.9
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 5.0e-100 368.6 308 60.7
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.9e-99 366.7 306 60.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 5.6e-99 365.2 310 58.4
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 1.0e-97 360.9 305 60.0
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.0e-97 360.9 343 56.3
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 3.1e-97 359.4 310 58.7
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 4.0e-97 359.0 298 59.7
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 6.8e-97 358.2 308 60.1
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 2.0e-96 356.7 320 55.9
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 2.6e-96 356.3 323 56.7
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 5.8e-96 355.1 277 63.2
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 2.9e-95 352.8 397 49.4
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 1.4e-94 350.5 307 58.3
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.4e-94 350.5 351 52.7
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.9e-94 350.1 319 57.4
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.2e-94 349.4 272 61.8
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.2e-93 347.4 329 55.3
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.2e-93 347.4 320 54.7
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.6e-93 347.1 349 56.2
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 4.6e-93 345.5 318 56.9
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 4.6e-93 345.5 221 79.6
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 6.0e-93 345.1 296 58.8
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 1.0e-92 344.4 276 62.3
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 4.3e-91 339.0 300 58.7
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 5.6e-91 338.6 318 56.0
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 2.3e-89 333.2 278 60.4
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 8.9e-89 331.3 298 57.4
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.6e-88 329.7 231 68.4
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.1e-85 320.1 309 53.4
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 2.1e-85 320.1 309 53.4
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 3.5e-85 319.3 307 56.4
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.1e-83 314.3 330 49.7
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.9e-83 313.5 272 56.2
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 9.5e-83 311.2 222 68.0
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 6.2e-82 308.5 269 59.5
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 4.4e-80 302.4 228 66.7
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.7e-79 300.4 337 48.1
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.7e-79 300.4 263 58.6
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.2e-79 300.1 331 49.8
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 6.4e-79 298.5 216 69.0
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 5.4e-78 295.4 310 52.9
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.5e-75 287.3 229 62.9
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 2.1e-74 283.5 239 60.3
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 8.1e-74 281.6 220 63.2
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 2.4e-73 280.0 304 51.0
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.1e-73 279.6 298 49.3
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 3.4e-72 276.2 224 61.2
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 2.9e-71 273.1 206 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 4.6e-69 265.8 338 45.3
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 4.3e-67 259.2 313 43.5
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 7.3e-67 258.5 310 48.4
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.8e-66 256.5 315 45.1
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 4.0e-65 252.7 222 62.2
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 5.8e-64 248.8 305 49.2
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 6.0e-61 238.8 151 73.5
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 6.0e-61 238.8 184 65.2
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.5e-56 224.2 196 56.1
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.4e-54 216.9 262 47.3
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 5.4e-54 215.7 162 66.7
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 4.3e-51 206.1 280 40.7
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 8.1e-50 201.8 160 61.9
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 1.3e-47 194.5 178 58.4
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.8e-41 174.1 140 62.9
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 5.3e-41 172.6 169 54.4
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 5.3e-41 172.6 123 65.0
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.8e-36 157.5 100 71.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 9.4e-30 135.2 85 76.5
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.2e-29 134.8 100 68.0
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.4e-28 131.3 104 61.5
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 3.0e-28 130.2 179 42.5
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.5e-22 109.4 101 53.5
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.2e-16 91.7 80 56.2
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 4.2e-14 83.2 97 51.5
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 5.5e-14 82.8 92 46.7
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 3.9e-12 76.6 72 58.3
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 7.4e-11 72.4 67 61.2
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.7e-10 71.2 44 75.0
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.8e-10 70.5 67 47.8
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 1.1e-09 68.6 67 53.7
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 5.3e-09 66.2 50 66.0
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 1.3e-07 61.6 65 50.8
Medtr4g015670 Medicago truncatula HOM05D006152 ORTHO05D008137 7.2e-06 55.8 56 53.6


User provided reference genes

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