Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 9.4e-56 219.9 109 100.0
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 6.8e-30 134.0 108 65.7
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.6e-29 132.1 118 65.3
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.4e-27 126.3 109 64.2
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.4e-27 126.3 112 63.4
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.8e-27 125.9 115 60.0
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 5.4e-27 124.4 120 57.5
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 7.0e-27 124.0 109 65.1
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.6e-26 122.9 114 61.4
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 2.0e-26 122.5 118 55.1
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 2.7e-26 122.1 106 63.2
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 1.7e-25 119.4 117 58.1
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.7e-25 119.4 119 56.3
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 3.8e-25 118.2 119 53.8
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.0e-25 117.9 116 56.0
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 8.6e-25 117.1 120 53.3
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.5e-24 116.3 112 55.4
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.9e-24 115.9 121 57.0
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.9e-24 115.9 116 57.8
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.5e-24 115.5 119 54.6
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 3.3e-24 115.2 117 52.1
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 5.5e-24 114.4 123 56.9
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 7.2e-24 114.0 116 52.6
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 7.2e-24 114.0 116 56.0
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 1.2e-23 113.2 113 55.8
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.6e-23 112.8 113 54.9
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.1e-23 112.5 118 53.4
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 2.8e-23 112.1 115 53.0
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.8e-23 112.1 118 52.5
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.6e-23 111.7 118 51.7
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.6e-23 111.7 116 52.6
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 4.7e-23 111.3 110 59.1
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.7e-23 111.3 118 53.4
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.7e-23 111.3 118 53.4
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 1.0e-22 110.2 120 50.0
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.0e-22 110.2 117 52.1
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.4e-22 109.8 123 50.4
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 1.8e-22 109.4 96 60.4
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 2.3e-22 109.0 112 51.8
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-22 109.0 118 52.5
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 3.0e-22 108.6 116 51.7
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 4.0e-22 108.2 117 52.1
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 5.2e-22 107.8 113 54.9
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 5.2e-22 107.8 107 56.1
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 6.8e-22 107.5 121 49.6
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 6.8e-22 107.5 125 47.2
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 6.8e-22 107.5 116 50.9
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 6.8e-22 107.5 121 48.8
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 6.8e-22 107.5 108 53.7
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 8.9e-22 107.1 114 52.6
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 8.9e-22 107.1 111 51.4
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 8.9e-22 107.1 116 50.9
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 8.9e-22 107.1 134 47.8
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.2e-21 106.7 120 51.7
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.5e-21 106.3 123 50.4
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 2.0e-21 105.9 123 52.0
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.0e-21 105.9 112 50.0
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 2.0e-21 105.9 121 52.1
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.0e-21 105.9 122 48.4
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.0e-21 105.9 113 53.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 2.6e-21 105.5 120 50.0
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.4e-21 104.8 112 50.0
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.7e-21 104.4 108 49.1
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 5.7e-21 104.4 109 49.5
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 7.5e-21 104.0 125 50.4
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 7.5e-21 104.0 118 50.8
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 9.8e-21 103.6 109 50.5
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.7e-20 102.8 120 48.3
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.7e-20 102.8 111 49.5
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.7e-20 102.8 120 50.0
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.2e-20 102.4 109 47.7
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.2e-20 102.4 121 47.1
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.8e-20 102.1 133 48.1
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 2.8e-20 102.1 121 49.6
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.7e-20 101.7 124 49.2
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 4.9e-20 101.3 68 64.7
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 4.9e-20 101.3 116 50.0
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.3e-20 100.9 102 52.0
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 6.3e-20 100.9 117 51.3
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 8.3e-20 100.5 120 48.3
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 8.3e-20 100.5 125 46.4
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 8.3e-20 100.5 128 46.1
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 8.3e-20 100.5 116 48.3
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 8.3e-20 100.5 110 48.2
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.1e-19 100.1 120 47.5
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 1.1e-19 100.1 118 47.5
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 1.4e-19 99.8 120 48.3
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 1.4e-19 99.8 120 48.3
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 1.8e-19 99.4 119 48.7
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.8e-19 99.4 116 49.1
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.4e-19 99.0 120 47.5
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.4e-19 99.0 119 48.7
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 2.4e-19 99.0 118 50.8
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 2.4e-19 99.0 122 47.5
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 3.1e-19 98.6 111 49.5
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 5.4e-19 97.8 120 46.7
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 5.4e-19 97.8 120 47.5
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.4e-19 97.8 110 49.1
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 5.4e-19 97.8 107 46.7
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 9.2e-19 97.1 121 43.8
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 9.2e-19 97.1 110 47.3
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 9.2e-19 97.1 116 46.6
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 9.2e-19 97.1 110 50.9
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 2.7e-18 95.5 111 48.6
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 4.5e-18 94.7 126 44.4
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 7.8e-18 94.0 65 63.1
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 7.8e-18 94.0 121 44.6
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.0e-17 93.6 111 45.9
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 1.0e-17 93.6 118 45.8
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 2.9e-17 92.0 131 42.7
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 8.6e-17 90.5 128 44.5
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 1.9e-16 89.4 62 67.7
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 5.6e-16 87.8 113 44.2
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 7.3e-16 87.4 112 44.6
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 2.8e-15 85.5 112 43.8
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.6e-15 85.1 91 45.1
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.7e-15 84.7 94 47.9
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.3e-14 82.4 107 43.0
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 8.9e-14 80.5 98 44.9
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.7e-12 76.3 68 48.5
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 4.9e-12 74.7 125 34.4
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.4e-11 73.2 55 60.0
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 2.4e-11 72.4 99 43.4
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 3.2e-11 72.0 127 39.4
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 5.4e-11 71.2 87 44.8
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 7.0e-11 70.9 117 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.7e-10 68.9 59 45.8
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 4.6e-10 68.2 96 42.7
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.6e-10 68.2 63 41.3
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 6.0e-10 67.8 66 42.4
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.7e-09 66.2 77 41.6
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.7e-09 66.2 127 38.6
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 8.6e-09 63.9 42 61.9
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 2.5e-08 62.4 121 34.7
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.6e-07 59.7 65 40.0
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.1e-07 59.3 62 41.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 8.0e-07 57.4 47 53.2
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.1e-06 57.0 101 30.7


User provided reference genes

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