Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 6.3e-129 464.2 241 100.0
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.9e-88 329.7 248 73.0
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 3.0e-86 322.4 246 72.8
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 7.3e-85 317.8 248 71.8
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.6e-84 316.6 248 70.6
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 2.8e-84 315.8 248 70.6
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 3.6e-84 315.5 268 67.5
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 3.4e-82 308.9 248 69.0
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 6.4e-81 304.7 250 69.6
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 1.4e-80 303.5 210 75.7
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 1.2e-79 300.4 245 69.4
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 8.1e-76 287.7 247 66.4
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 5.4e-72 275.0 247 65.2
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 7.1e-72 274.6 244 63.9
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 2.1e-71 273.1 248 65.7
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 4.6e-71 271.9 251 63.7
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 7.8e-71 271.2 262 62.2
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 3.9e-70 268.9 243 63.8
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 1.9e-69 266.5 244 63.9
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.6e-68 263.5 256 62.5
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 4.8e-68 261.9 249 63.1
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 1.4e-67 260.4 242 64.5
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 4.0e-67 258.8 245 61.2
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 5.3e-67 258.5 249 61.0
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.2e-66 257.3 242 64.5
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 1.2e-66 257.3 249 61.0
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 1.5e-66 256.9 252 61.9
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.0e-66 256.5 207 68.6
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 2.6e-66 256.1 247 59.9
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 4.4e-66 255.4 250 62.0
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 4.4e-66 255.4 250 62.0
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 5.8e-66 255.0 248 61.7
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 1.3e-65 253.8 252 59.1
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.1e-63 246.5 245 60.0
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 8.7e-62 241.1 269 55.4
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.5e-61 240.4 249 56.6
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 3.3e-61 239.2 254 57.1
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 4.3e-61 238.8 243 58.0
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 5.6e-61 238.4 246 60.6
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 1.3e-60 237.3 242 58.7
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 1.3e-60 237.3 275 55.3
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 2.8e-60 236.1 202 66.3
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 3.6e-60 235.7 246 58.9
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 3.6e-60 235.7 246 60.2
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.4e-59 233.8 253 57.7
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 3.1e-59 232.6 253 56.5
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 3.1e-59 232.6 250 58.0
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 1.2e-58 230.7 244 57.0
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 1.5e-58 230.3 249 56.2
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 2.0e-58 229.9 246 56.1
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.4e-58 229.2 245 58.4
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 3.4e-58 229.2 245 55.9
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 9.9e-58 227.6 246 57.7
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 9.9e-58 227.6 245 58.4
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 2.9e-57 226.1 248 54.8
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 4.9e-57 225.3 250 56.0
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 6.4e-57 224.9 247 53.8
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 1.1e-56 224.2 259 56.8
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.1e-56 224.2 264 55.3
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 1.4e-56 223.8 187 65.8
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 1.4e-56 223.8 253 54.9
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 4.2e-56 222.2 257 55.3
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 5.5e-56 221.9 291 51.5
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 1.2e-55 220.7 247 56.3
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.2e-55 220.7 253 56.5
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.7e-55 219.5 249 57.8
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 4.6e-55 218.8 241 54.8
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 1.0e-54 217.6 182 66.5
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.0e-54 217.6 247 56.3
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 1.0e-54 217.6 251 55.0
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.8e-54 216.9 244 54.5
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 1.8e-54 216.9 249 53.0
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 1.8e-54 216.9 250 53.2
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.9e-54 215.7 243 56.0
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 5.1e-54 215.3 282 50.7
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 1.9e-53 213.4 244 54.5
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 5.6e-53 211.8 248 54.0
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 9.6e-53 211.1 241 54.8
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 1.3e-52 210.7 253 54.5
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 1.8e-51 206.8 248 51.6
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 5.3e-51 205.3 243 54.3
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 6.9e-51 204.9 243 53.5
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 2.6e-50 203.0 243 53.1
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 3.4e-50 202.6 243 53.5
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 4.5e-50 202.2 243 53.5
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 7.6e-50 201.4 233 52.8
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 1.3e-49 200.7 185 63.8
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 1.4e-48 197.2 246 50.8
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 3.2e-48 196.1 226 53.5
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 3.2e-48 196.1 241 55.2
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 4.2e-48 195.7 237 51.5
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 1.2e-47 194.1 258 51.2
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.5e-47 192.6 211 57.3
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 7.9e-47 191.4 247 51.4
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 1.3e-46 190.7 241 50.6
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-45 187.2 234 50.9
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 1.5e-45 187.2 247 49.8
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.9e-45 186.8 234 50.9
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 4.3e-45 185.7 234 50.4
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.3e-44 184.1 133 72.2
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 5.3e-43 178.7 237 48.5
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 6.9e-43 178.3 245 49.8
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 9.0e-43 177.9 187 58.3
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.2e-42 177.6 246 51.6
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 3.4e-42 176.0 135 68.9
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.0e-41 174.5 245 48.6
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.0e-41 174.5 228 46.9
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.0e-41 174.5 150 64.7
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.9e-41 172.9 150 64.0
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 1.4e-40 170.6 136 67.6
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 2.5e-40 169.9 258 48.1
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 6.1e-39 165.2 257 44.7
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 6.3e-36 155.2 246 45.1
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 3.1e-35 152.9 245 43.3
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 5.9e-34 148.7 121 66.1
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 3.8e-33 146.0 134 59.7
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 9.4e-32 141.4 212 49.1
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 4.6e-31 139.0 187 49.2
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 1.9e-24 117.1 175 47.4
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 3.6e-23 112.8 73 75.3
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 6.7e-22 108.6 176 45.5
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 8.8e-22 108.2 175 44.0
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 1.5e-21 107.5 74 74.3
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 5.0e-17 92.4 161 45.3
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 6.5e-17 92.0 174 42.5
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 9.4e-16 88.2 136 45.6
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 4.0e-14 82.8 59 78.0
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 1.2e-13 81.3 248 34.7
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.5e-10 69.7 128 41.4
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.0e-09 68.2 56 62.5
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 5.0e-09 65.9 100 47.0
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 1.4e-06 57.8 251 29.9
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-06 57.4 86 47.7
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 2.3e-06 57.0 133 37.6
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 4.0e-06 56.2 130 36.2


User provided reference genes

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