Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 0.0e+00 1102.0 576 100.0
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 4.1e-235 818.1 619 73.3
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.0e-217 760.4 610 68.9
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 4.3e-216 755.0 612 68.0
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 7.3e-216 754.2 617 68.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.9e-208 729.6 618 66.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 6.8e-206 721.1 630 66.3
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 4.3e-200 701.8 633 64.3
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.6e-199 699.9 633 63.8
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.1e-198 695.7 622 64.0
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 5.4e-187 658.3 630 61.9
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.3e-185 653.7 593 63.6
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 5.8e-181 638.3 620 60.0
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.4e-174 617.1 626 56.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.1e-174 615.9 609 57.5
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.0e-174 615.5 640 58.3
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.6e-173 612.8 637 55.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.9e-172 609.4 638 55.5
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.5e-171 606.3 628 54.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 5.7e-168 595.1 581 59.4
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.5e-165 587.0 620 56.1
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.5e-165 587.0 612 54.1
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.9e-165 585.1 637 52.7
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 8.5e-164 581.3 630 53.3
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 7.2e-163 578.2 633 54.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 7.2e-163 578.2 633 54.2
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.6e-162 577.0 620 54.5
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.6e-162 577.0 627 53.6
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.1e-162 576.6 617 52.8
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.1e-162 576.6 618 54.5
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.6e-162 575.5 627 52.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.8e-161 573.5 630 53.7
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.8e-161 573.5 621 54.4
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 3.9e-161 572.4 637 51.6
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 6.7e-161 571.6 634 52.1
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 8.8e-161 571.2 617 54.5
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 2.5e-160 569.7 643 51.3
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.7e-160 568.5 620 54.2
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 7.4e-160 568.2 632 52.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.4e-158 563.9 613 53.3
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.8e-158 563.5 639 51.8
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 5.9e-157 558.5 592 52.5
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.7e-154 548.9 639 50.1
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-153 547.4 639 50.1
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.8e-153 547.0 639 50.2
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.3e-153 546.6 639 50.2
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.3e-153 546.6 639 50.1
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.3e-153 546.6 639 50.1
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.0e-153 546.2 607 52.1
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 5.1e-153 545.4 625 52.3
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 6.7e-153 545.0 616 51.5
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-152 543.9 626 51.0
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 3.3e-152 542.7 616 50.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.7e-152 542.0 639 49.9
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.4e-152 541.6 622 51.1
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 4.8e-151 538.9 625 51.0
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 4.5e-149 532.3 630 49.0
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 7.7e-149 531.6 610 48.9
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 6.5e-148 528.5 627 50.6
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.1e-147 527.7 631 50.2
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 3.2e-147 526.2 631 51.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.2e-147 525.8 608 50.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 4.7e-146 522.3 644 50.0
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.0e-145 521.2 632 50.3
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 3.9e-145 519.2 613 49.4
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 6.7e-145 518.5 618 47.7
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.5e-144 517.3 640 48.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.4e-144 515.8 636 48.3
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.7e-143 513.8 618 47.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 6.3e-143 511.9 642 47.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 3.1e-142 509.6 601 49.3
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 4.1e-142 509.2 613 47.1
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.6e-141 506.5 608 47.9
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.5e-141 505.8 610 48.5
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.9e-140 503.1 601 49.1
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.1e-139 501.1 609 47.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.9e-139 500.4 614 49.3
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 4.2e-139 499.2 602 49.0
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 5.5e-139 498.8 604 48.8
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 7.2e-139 498.4 604 48.8
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 4.7e-138 495.7 617 46.7
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.8e-137 493.8 591 48.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-136 490.3 600 48.7
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.6e-136 490.0 614 47.2
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 4.4e-136 489.2 584 49.0
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.7e-135 487.3 610 46.4
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.4e-134 483.4 610 46.7
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.3e-132 477.6 632 44.9
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.2e-132 476.9 620 45.3
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.2e-130 471.1 631 44.1
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.6e-130 470.7 623 46.5
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 8.8e-129 464.9 547 50.8
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 9.8e-128 461.5 606 46.0
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 2.7e-125 453.4 388 66.8
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 7.7e-125 451.8 601 43.9
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 6.6e-124 448.7 622 46.1
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 8.0e-122 441.8 590 44.9
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 9.2e-118 428.3 311 74.6
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.7e-116 424.1 589 45.0
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 4.3e-115 419.5 653 40.9
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.6e-114 417.5 541 47.3
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 6.1e-114 415.6 622 42.6
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 2.9e-111 406.8 649 40.1
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 7.8e-109 398.7 383 59.5
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.9e-107 394.0 590 44.4
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-107 394.0 427 54.6
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 4.3e-107 392.9 638 39.0
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 7.3e-107 392.1 399 56.1
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.1e-105 388.3 563 41.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.0e-105 386.3 559 41.1
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.9e-105 385.2 426 53.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.6e-96 357.1 493 43.0
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.0e-92 345.1 568 41.7
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.1e-89 335.1 578 40.1
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-89 334.7 578 39.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.8e-89 334.3 574 39.5
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 9.9e-88 328.6 580 39.0
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.7e-85 320.5 568 39.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 4.6e-85 319.7 581 39.4
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 2.3e-84 317.4 556 40.3
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 8.7e-84 315.5 316 57.3
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.9e-79 299.7 382 47.1
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 3.2e-78 297.0 616 36.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 6.0e-77 292.7 583 37.4
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 7.9e-77 292.4 586 36.7
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.8e-73 281.2 647 31.2
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.4e-73 280.8 368 44.6
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.4e-71 272.3 584 35.8
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.4e-70 269.6 585 36.1
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.0e-65 253.4 589 34.6
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 4.9e-63 246.5 567 33.0
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.8e-60 238.0 308 51.0
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-53 215.3 524 33.2
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-42 177.6 161 59.0
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.7e-42 177.2 496 33.3
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.2e-40 172.2 646 28.3
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 7.2e-38 162.9 161 60.2
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.8e-36 158.3 227 44.9
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 3.3e-35 154.1 127 63.8
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-31 142.1 143 54.5
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-30 138.3 107 70.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 7.2e-30 136.3 106 69.8
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 8.0e-29 132.9 111 63.1
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-27 128.6 134 53.7
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.1e-22 112.5 71 74.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 2.7e-21 107.8 91 61.5
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 6.1e-21 106.7 330 29.7
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 6.1e-21 106.7 453 24.9
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 8.8e-20 102.8 74 71.6
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 8.8e-20 102.8 66 77.3
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 2.6e-19 101.3 161 39.8
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 2.6e-19 101.3 86 64.0
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.6e-19 101.3 85 58.8
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-16 91.7 68 64.7
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 7.7e-16 89.7 51 84.3
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 5.0e-15 87.0 68 63.2
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 8.5e-15 86.3 71 59.2
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 5.5e-14 83.6 126 41.3
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 6.1e-13 80.1 94 51.1
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.4e-12 79.0 70 55.7
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 8.3e-10 69.7 122 35.2
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-09 68.6 80 46.2
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.2e-08 65.9 144 36.8
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-08 65.9 47 66.0
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 5.9e-08 63.5 77 42.9
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 3.8e-07 60.8 61 52.5
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 6.6e-07 60.1 186 30.6
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 6.6e-07 60.1 186 30.6
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.5e-06 58.2 186 30.1
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 5.6e-06 57.0 50 50.0
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 9.5e-06 56.2 68 47.1


User provided reference genes

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