Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 1.3e-155 554.3 375 100.0
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 7.0e-80 302.8 372 68.8
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.9e-77 294.7 357 68.9
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 5.5e-77 293.1 345 69.6
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 7.2e-77 292.7 379 67.0
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 5.2e-75 286.6 341 70.1
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 5.7e-74 283.1 321 72.6
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 4.1e-72 276.9 307 73.6
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.9e-71 273.1 379 65.2
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 1.0e-70 272.3 379 65.2
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.9e-70 270.8 379 64.6
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 5.0e-70 270.0 367 64.6
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 8.5e-70 269.2 375 62.9
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 6.8e-67 259.6 325 68.6
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 8.8e-67 259.2 374 62.3
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 8.8e-67 259.2 324 66.7
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 1.5e-66 258.5 378 64.0
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 2.0e-66 258.1 317 64.4
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 1.7e-65 255.0 366 64.8
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 2.2e-65 254.6 343 64.7
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 4.8e-65 253.4 347 65.1
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 8.3e-65 252.7 332 66.0
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 1.8e-64 251.5 343 65.0
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 5.4e-64 250.0 317 68.1
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.2e-63 248.8 199 62.3
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 2.0e-63 248.1 172 70.9
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 3.5e-63 247.3 366 63.4
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.5e-63 247.3 317 68.5
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 4.5e-63 246.9 343 65.0
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 3.8e-62 243.8 350 64.3
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 1.1e-61 242.3 344 47.7
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.1e-61 242.3 359 63.5
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 2.5e-61 241.1 344 47.4
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 4.2e-61 240.4 360 61.1
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 7.2e-61 239.6 382 60.5
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 7.2e-61 239.6 219 59.8
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 9.4e-61 239.2 344 47.1
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 2.1e-60 238.0 345 62.9
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 2.7e-60 237.7 168 66.7
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 3.6e-60 237.3 168 67.3
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 3.6e-60 237.3 312 68.3
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 4.7e-60 236.9 344 46.5
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 4.7e-60 236.9 344 46.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.0e-59 235.7 396 56.8
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 1.8e-59 235.0 329 55.0
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 3.0e-59 234.2 213 57.7
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 4.0e-59 233.8 326 64.4
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 4.0e-59 233.8 219 57.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 1.2e-58 232.3 329 62.9
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 2.6e-58 231.1 194 61.3
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 5.7e-58 229.9 318 66.0
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.3e-57 228.8 182 62.6
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 2.8e-57 227.6 176 63.6
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.8e-57 227.6 183 60.1
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 6.3e-57 226.5 352 60.2
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 6.3e-57 226.5 328 64.6
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 8.3e-57 226.1 175 61.7
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 4.1e-56 223.8 367 59.4
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 3.5e-55 220.7 363 59.2
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 2.3e-54 218.0 208 54.3
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 3.8e-54 217.2 171 60.8
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 7.3e-53 213.0 243 47.7
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 1.2e-52 212.2 237 51.1
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.8e-52 211.1 181 56.4
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 6.1e-52 209.9 168 58.3
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 8.0e-52 209.5 223 51.1
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.0e-51 209.1 243 48.6
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.8e-51 208.4 283 67.8
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.8e-51 208.4 231 48.9
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 3.0e-51 207.6 223 51.6
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 3.0e-51 207.6 222 50.9
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 4.0e-51 207.2 371 56.6
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 1.5e-50 205.3 375 55.5
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 9.8e-50 202.6 215 50.2
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 2.0e-47 194.9 224 46.4
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 2.7e-47 194.5 170 56.5
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 4.9e-41 173.7 138 55.8
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 9.5e-37 159.5 116 60.3
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.4e-35 155.6 176 47.2
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 1.5e-34 152.1 170 45.3
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 2.0e-34 151.8 231 69.7
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 1.3e-33 149.1 88 79.5
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.1e-32 144.1 109 67.0
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 5.8e-26 123.6 174 36.2
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 2.1e-23 115.2 196 36.2
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.7e-23 114.8 167 39.5
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 3.5e-23 114.4 172 38.4
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 5.6e-21 107.1 72 68.1
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 3.6e-20 104.4 71 69.0
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 2.0e-18 98.6 64 71.9
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 8.4e-17 93.2 155 40.6
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 2.5e-13 81.6 194 69.6
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 6.2e-12 77.0 55 65.5
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.8e-11 75.5 67 53.7
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.2e-10 72.8 68 51.5
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 5.8e-10 70.5 67 50.7
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 3.5e-07 61.2 68 45.6
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 3.5e-07 61.2 68 45.6
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 8.7e-06 56.6 93 31.2


User provided reference genes

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