Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 5.8e-115 417.5 205 100.0
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.2e-75 287.0 166 80.7
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 1.3e-74 283.5 167 81.4
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 2.3e-71 272.7 166 78.3
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 1.5e-70 270.0 167 77.2
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 6.2e-69 264.6 162 78.4
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 9.0e-68 260.8 166 74.1
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 6.5e-66 254.6 166 73.5
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.1e-65 253.8 166 74.1
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 6.0e-64 248.1 168 73.2
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.3e-63 246.1 168 72.6
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 2.3e-63 246.1 168 72.6
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.5e-62 243.4 168 72.0
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 8.5e-58 227.6 137 78.8
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 2.1e-56 223.0 138 76.8
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 4.6e-56 221.9 157 68.8
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 9.7e-54 214.2 159 63.5
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.3e-53 213.8 159 64.2
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.3e-53 213.8 159 64.2
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 2.2e-53 213.0 159 65.4
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 6.3e-53 211.5 159 64.2
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 2.4e-52 209.5 156 66.0
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 3.1e-52 209.1 159 60.4
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.1e-52 209.1 159 61.6
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 3.1e-52 209.1 159 62.3
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 4.1e-52 208.8 159 63.5
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 5.3e-52 208.4 156 65.4
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 1.2e-51 207.2 156 65.4
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-51 207.2 159 61.0
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 1.5e-51 206.8 163 58.9
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.5e-51 206.8 157 63.1
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 1.5e-51 206.8 159 59.7
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.6e-51 206.1 159 60.4
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.6e-51 206.1 157 61.1
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 4.5e-51 205.3 153 62.7
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 4.5e-51 205.3 157 61.8
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 4.5e-51 205.3 158 62.0
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 5.9e-51 204.9 159 61.0
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 7.7e-51 204.5 159 62.9
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 1.7e-50 203.4 161 60.9
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 1.7e-50 203.4 160 63.1
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 5.0e-50 201.8 156 62.8
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 6.5e-50 201.4 157 63.1
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 8.5e-50 201.1 156 62.8
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 8.5e-50 201.1 157 63.1
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.1e-49 200.7 159 61.6
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 1.1e-49 200.7 156 61.5
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 1.4e-49 200.3 159 60.4
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.4e-49 200.3 159 60.4
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.4e-49 200.3 159 59.7
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.9e-49 199.9 157 62.4
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 3.2e-49 199.1 145 64.1
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 4.2e-49 198.7 153 62.1
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 5.5e-49 198.4 156 61.5
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 5.5e-49 198.4 165 58.8
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 5.5e-49 198.4 132 74.2
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 9.4e-49 197.6 152 63.8
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.2e-48 197.2 153 60.1
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.2e-48 197.2 161 58.4
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 1.2e-48 197.2 157 60.5
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 6.1e-48 194.9 158 60.1
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 6.1e-48 194.9 144 63.9
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 1.4e-47 193.7 160 60.0
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 5.1e-47 191.8 164 55.5
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 1.5e-46 190.3 158 58.9
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 4.4e-46 188.7 160 56.2
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 7.4e-46 188.0 155 59.4
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 2.2e-45 186.4 160 56.2
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 2.2e-45 186.4 148 61.5
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 8.2e-45 184.5 160 55.6
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.4e-44 183.7 160 55.0
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 4.1e-44 182.2 160 55.0
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 9.1e-44 181.0 160 53.1
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 9.1e-44 181.0 160 53.1
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 9.1e-44 181.0 160 53.1
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 1.2e-43 180.6 160 53.1
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 1.5e-43 180.3 166 55.4
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 2.6e-43 179.5 160 52.5
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 4.5e-43 178.7 160 53.8
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 4.5e-43 178.7 161 53.4
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 7.7e-43 177.9 156 55.8
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.3e-42 177.2 161 55.9
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 1.7e-42 176.8 156 55.8
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.7e-42 176.8 157 54.8
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 1.7e-42 176.8 161 55.3
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 6.5e-42 174.9 157 51.6
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 1.1e-41 174.1 165 52.1
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 7.2e-41 171.4 157 51.0
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 1.6e-40 170.2 172 50.0
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 3.6e-40 169.1 134 56.7
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 1.0e-39 167.5 130 60.8
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 2.6e-38 162.9 178 50.6
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 5.7e-38 161.8 178 50.0
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 9.7e-38 161.0 121 62.8
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 2.8e-37 159.5 129 59.7
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 3.7e-37 159.1 130 56.2
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 3.1e-36 156.0 181 45.3
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 3.2e-33 146.0 168 44.6
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 5.5e-33 145.2 160 49.4
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 4.7e-32 142.1 186 45.2
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.3e-29 134.0 103 64.1
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.2e-27 127.5 139 46.8
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.0e-26 124.4 96 60.4
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.0e-23 114.4 110 52.7
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 1.8e-23 113.6 128 45.3
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 2.3e-23 113.2 151 43.0
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 3.8e-18 95.9 162 39.5
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 2.5e-17 93.2 106 43.4
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 6.8e-15 85.1 163 35.0
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 1.2e-14 84.3 125 43.2
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 7.5e-14 81.6 135 37.8
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 2.2e-13 80.1 123 36.6
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.3e-10 70.9 125 32.0
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 1.1e-09 67.8 48 60.4
Glyma.08G289700 Glycine max HOM05D002799 ORTHO05D008889 6.1e-08 62.0 48 62.5
Glyma.18G134800 Glycine max HOM05D002799 ORTHO05D008889 8.9e-07 58.2 35 80.0


User provided reference genes

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