Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0019910 Lotus japonicus HOM05D006322 ORTHO05D007716 3.5e-135 485.0 241 100.0
Medtr4g121940 Medicago truncatula HOM05D006322 ORTHO05D007716 1.5e-106 389.8 227 83.7
Glyma.17G032700 Glycine max HOM05D006322 ORTHO05D007716 5.4e-104 381.3 230 82.2
Phvul.003G113400 Phaseolus vulgaris HOM05D006322 ORTHO05D007716 2.5e-101 372.5 230 79.1
arahy.Tifrunner.gnm1.ann1.WPA2XH Arachis hypogaea HOM05D006322 ORTHO05D007716 1.8e-99 366.3 230 77.8
VMungo1215G3118 Vigna mungo HOM05D006322 ORTHO05D007716 8.9e-99 364.0 230 77.4
arahy.Tifrunner.gnm1.ann1.57P81C Arachis hypogaea HOM05D006322 ORTHO05D007716 2.0e-98 362.8 230 77.0
Ca_21447_v3 Cicer arietinum L. HOM05D006322 ORTHO05D007716 1.4e-96 356.7 231 77.1
Lalb_Chr13g0298441 Lupinus albus HOM05D006322 ORTHO05D007716 2.4e-96 355.9 218 78.4
Psat4g024200 Pisum sativum HOM05D006322 ORTHO05D007716 4.0e-91 338.6 220 74.1
Haze_01283 Corylus avellana HOM05D006322 ORTHO05D007716 3.4e-90 335.5 230 70.0
Atru.chr4.3025 Acer truncatum HOM05D006322 ORTHO05D007716 5.8e-90 334.7 230 68.7
QL06p011774 Quercus lobata HOM05D006322 ORTHO05D007716 2.2e-89 332.8 225 70.7
Psat4g024280 Pisum sativum HOM05D006322 ORTHO05D007716 6.4e-89 331.3 225 72.9
Thecc.04G298700 Theobroma cacao HOM05D006322 ORTHO05D007716 6.4e-89 331.3 231 69.3
COL.COLO4_34636 Corchorus olitorius HOM05D006322 ORTHO05D007716 1.1e-88 330.5 231 69.7
Cfa015332 Carpinus fangiana HOM05D006322 ORTHO05D007716 1.9e-88 329.7 230 68.7
TWI09G0431 Tripterygium wilfordii HOM05D006322 ORTHO05D007716 7.1e-88 327.8 218 72.0
Manes.03G203000 Manihot esculenta HOM05D006322 ORTHO05D007716 9.2e-88 327.4 230 67.4
TAR636G2967 Trochodendron aralioides HOM05D006322 ORTHO05D007716 4.6e-87 325.1 218 68.8
Oeu019970.1 Olea europaea HOM05D006322 ORTHO05D007716 1.0e-86 323.9 222 67.1
Ciclev10005751m.g Citrus clementina HOM05D006322 ORTHO05D007716 6.6e-86 321.2 240 67.1
Migut.N00046 Erythranthe guttata HOM05D006322 ORTHO05D007716 6.6e-86 321.2 211 69.7
Actinidia40367 Actinidia chinensis HOM05D006322 ORTHO05D007716 1.9e-85 319.7 219 67.6
HanXRQChr13g0395571 Helianthus annuus HOM05D006322 ORTHO05D007716 2.5e-85 319.3 230 64.3
Peaxi162Scf00244g00413 Petunia axillaris HOM05D006322 ORTHO05D007716 3.3e-85 318.9 226 65.9
Duzib052G0456 Durio zibethinus HOM05D006322 ORTHO05D007716 1.6e-84 316.6 222 67.1
Sopen11g003410 Solanum pennellii HOM05D006322 ORTHO05D007716 2.1e-84 316.2 226 64.2
MSTRG.24817 Avicennia marina HOM05D006322 ORTHO05D007716 2.8e-84 315.8 223 66.8
CANSAT78G1173 Cannabis sativa HOM05D006322 ORTHO05D007716 2.8e-84 315.8 227 67.0
Nitab4.5_0001807g0060 Nicotiana tabacum HOM05D006322 ORTHO05D007716 4.7e-84 315.1 223 65.0
Eucgr.A00353 Eucalyptus grandis HOM05D006322 ORTHO05D007716 6.2e-84 314.7 215 67.9
Nitab4.5_0002259g0050 Nicotiana tabacum HOM05D006322 ORTHO05D007716 1.1e-83 313.9 223 64.6
Solyc11g007570.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 1.1e-83 313.9 221 64.3
PGSC0003DMG400027315 Solanum tuberosum HOM05D006322 ORTHO05D007716 1.1e-83 313.9 217 65.4
Hma1.2p1_0078F.1_g040000 Hydrangea macrophylla HOM05D006322 ORTHO05D007716 1.4e-83 313.5 212 69.3
PGR031G3552 Punica granatum HOM05D006322 ORTHO05D007716 1.8e-83 313.2 212 68.9
Aqoxy2G02768 Aquilegia oxysepala HOM05D006322 ORTHO05D007716 2.3e-83 312.8 220 68.6
Gohir.A09G235000 Gossypium hirsutum HOM05D006322 ORTHO05D007716 2.3e-83 312.8 223 66.8
Cpa.g.sc9.74 Carica papaya HOM05D006322 ORTHO05D007716 3.1e-83 312.4 229 65.5
CiPaw.01G139400 Carya illinoinensis HOM05D006322 ORTHO05D007716 6.8e-83 311.2 214 69.2
Potri.008G106600 Populus trichocarpa HOM05D006322 ORTHO05D007716 1.2e-82 310.5 218 67.0
Cc03_g00960 Coffea canephora HOM05D006322 ORTHO05D007716 1.5e-82 310.1 232 62.5
SGA_v2.0_scaffold119G32659 Striga asiatica HOM05D006322 ORTHO05D007716 1.5e-82 310.1 215 67.4
Gohir.D09G235800 Gossypium hirsutum HOM05D006322 ORTHO05D007716 2.6e-82 309.3 218 67.4
Duzib151G0960 Durio zibethinus HOM05D006322 ORTHO05D007716 3.4e-82 308.9 223 67.7
Nn3g21692 Nelumbo nucifera HOM05D006322 ORTHO05D007716 5.8e-82 308.1 215 68.4
FAN07G2163 Fragaria x ananassa HOM05D006322 ORTHO05D007716 7.6e-82 307.8 224 64.3
SalBow5G5236 Salvia bowleyana HOM05D006322 ORTHO05D007716 9.9e-82 307.4 216 64.4
RcHm_v2.0_Chr4g0424801 Rosa chinensis HOM05D006322 ORTHO05D007716 1.3e-81 307.0 216 65.7
ECA233G0552 Erigeron canadensis HOM05D006322 ORTHO05D007716 2.2e-81 306.2 217 65.4
Gorai.006G258900 Gossypium raimondii HOM05D006322 ORTHO05D007716 2.2e-81 306.2 218 66.5
Sabra08G0080400 Salix brachista HOM05D006322 ORTHO05D007716 2.2e-81 306.2 220 65.5
CSS0012053 Camellia sinensis var. sinensis HOM05D006322 ORTHO05D007716 4.9e-81 305.1 223 64.6
BraA03t13148Z Brassica rapa HOM05D006322 ORTHO05D007716 1.1e-80 303.9 218 65.1
MD16G1155500 Malus domestica HOM05D006322 ORTHO05D007716 1.9e-80 303.1 228 63.2
GSVIVG01035010001 Vitis vinifera HOM05D006322 ORTHO05D007716 1.9e-80 303.1 202 71.8
A03p40000 Brassica napus HOM05D006322 ORTHO05D007716 2.4e-80 302.8 218 65.1
Lsat_1_v5_gn_6_16821 Lactuca sativa HOM05D006322 ORTHO05D007716 3.2e-80 302.4 220 64.5
Prupe.1G119400 Prunus persica HOM05D006322 ORTHO05D007716 3.2e-80 302.4 226 63.7
vmacro08057 Vaccinium macrocarpon HOM05D006322 ORTHO05D007716 3.2e-80 302.4 226 63.3
Lju470A16T21 Lonicera japonica HOM05D006322 ORTHO05D007716 5.4e-80 301.6 214 65.0
Sc25g0003310 Simmondsia chinensis HOM05D006322 ORTHO05D007716 1.6e-79 300.1 226 61.5
Carub.0003s1674 Capsella rubella HOM05D006322 ORTHO05D007716 2.1e-79 299.7 213 65.7
EL10Ac3g05469 Beta vulgaris HOM05D006322 ORTHO05D007716 7.8e-79 297.7 223 64.1
BcaB04g18916 Brassica carinata HOM05D006322 ORTHO05D007716 1.0e-78 297.4 223 63.7
BcaC01g03797 Brassica carinata HOM05D006322 ORTHO05D007716 1.0e-78 297.4 223 63.7
C03p48530 Brassica napus HOM05D006322 ORTHO05D007716 1.0e-78 297.4 223 63.7
BolC3t17131H Brassica oleracea HOM05D006322 ORTHO05D007716 1.0e-78 297.4 223 63.7
Hund11963 Selenicereus undatus HOM05D006322 ORTHO05D007716 1.0e-78 297.4 213 64.8
MBI19_g07237_MAGBIO Magnolia biondii HOM05D006322 ORTHO05D007716 5.1e-78 295.0 216 64.4
Thhalv10021446m.g Eutrema salsugineum HOM05D006322 ORTHO05D007716 6.6e-78 294.7 229 61.6
AL3G29970 Arabidopsis lyrata HOM05D006322 ORTHO05D007716 2.5e-77 292.7 218 63.3
PSO357G0527 Papaver somniferum HOM05D006322 ORTHO05D007716 2.5e-77 292.7 217 63.1
Aa31LG8G4030 Aethionema arabicum HOM05D006322 ORTHO05D007716 5.6e-77 291.6 217 61.8
CARHR092240 Cardamine hirsuta HOM05D006322 ORTHO05D007716 7.3e-77 291.2 220 61.8
AT3G16990 Arabidopsis thaliana HOM05D006322 ORTHO05D007716 3.6e-76 288.9 218 62.4
Rhsim04G0234900 Rhododendron simsii HOM05D006322 ORTHO05D007716 3.6e-76 288.9 223 61.4
PSO170G6693 Papaver somniferum HOM05D006322 ORTHO05D007716 4.7e-76 288.5 216 63.0
Dinv44297 Davidia involucrata HOM05D006322 ORTHO05D007716 1.4e-75 287.0 190 69.5
DCAR_027007 Daucus carota HOM05D006322 ORTHO05D007716 1.8e-75 286.6 292 51.0
CsaV3_6G022370 Cucumis sativus L. HOM05D006322 ORTHO05D007716 4.0e-75 285.4 209 65.6
Sp3g15210 Schrenkiella parvula HOM05D006322 ORTHO05D007716 2.0e-74 283.1 214 60.7
FAN12G2263 Fragaria x ananassa HOM05D006322 ORTHO05D007716 2.4e-72 276.2 198 64.6
ATR0796G257 Amborella trichopoda HOM05D006322 ORTHO05D007716 3.2e-72 275.8 231 57.6
MELO3C021273.2 Cucumis melo HOM05D006322 ORTHO05D007716 3.2e-72 275.8 211 62.6
BcaB04g18918 Brassica carinata HOM05D006322 ORTHO05D007716 3.5e-71 272.3 223 60.5
ClCG06G004620 Citrullus lanatus HOM05D006322 ORTHO05D007716 7.8e-71 271.2 211 60.2
Sed0017771 Sechium edule HOM05D006322 ORTHO05D007716 1.0e-70 270.8 209 60.8
CAN.G135.71 Capsicum annuum HOM05D006322 ORTHO05D007716 6.2e-68 261.5 177 67.2
HPP92_001241 Vanilla planifolia HOM05D006322 ORTHO05D007716 1.8e-67 260.0 215 56.3
Zm00001eb396140 Zea mays HOM05D006322 ORTHO05D007716 2.0e-66 256.5 208 56.7
Os03g0306900 Oryza sativa ssp. japonica HOM05D006322 ORTHO05D007716 9.9e-66 254.2 208 56.2
DCAR_030477 Daucus carota HOM05D006322 ORTHO05D007716 2.4e-64 249.6 221 54.8
FvH4_4g19550 Fragaria vesca HOM05D006322 ORTHO05D007716 1.6e-63 246.9 176 65.3
AUR62016124 Chenopodium quinoa HOM05D006322 ORTHO05D007716 3.5e-63 245.7 177 65.5
AUR62041396 Chenopodium quinoa HOM05D006322 ORTHO05D007716 4.6e-63 245.4 176 65.9
TPR.G20694 Trifolium pratense HOM05D006322 ORTHO05D007716 6.0e-63 245.0 160 73.8
SHI00180 Sapria himalayana HOM05D006322 ORTHO05D007716 3.9e-62 242.3 249 48.6
SEGI_24166 Sequoiadendron giganteum HOM05D006322 ORTHO05D007716 8.7e-62 241.1 210 56.2
THA.LOC104802603 Tarenaya hassleriana HOM05D006322 ORTHO05D007716 8.7e-62 241.1 174 62.1
Peaxi162Scf00244g00510 Petunia axillaris HOM05D006322 ORTHO05D007716 1.1e-61 240.7 241 49.4
Actinidia27045 Actinidia chinensis HOM05D006322 ORTHO05D007716 6.2e-60 235.0 156 70.5
CAN.G135.72 Capsicum annuum HOM05D006322 ORTHO05D007716 8.4e-57 224.6 224 49.6
TAR362G0340 Trochodendron aralioides HOM05D006322 ORTHO05D007716 2.1e-55 219.9 218 51.4
Ah.13g071980 Amaranthus hybridus HOM05D006322 ORTHO05D007716 2.7e-55 219.5 215 53.5
Solyc11g007560.2 Solanum lycopersicum HOM05D006322 ORTHO05D007716 4.6e-55 218.8 223 48.0
Nitab4.5_0001807g0070 Nicotiana tabacum HOM05D006322 ORTHO05D007716 8.1e-52 208.0 219 47.9
BcaB04g18915 Brassica carinata HOM05D001503 ORTHO05D003820 3.4e-50 202.6 179 58.7
Lalb_Chr20g0120881 Lupinus albus HOM05D006322 ORTHO05D007716 3.4e-50 202.6 141 68.8
EL10Ac7g16563 Beta vulgaris HOM05D006322 ORTHO05D007716 4.9e-49 198.7 157 60.5
Mapoly0003s0261 Marchantia polymorpha HOM05D006322 ORTHO05D007716 6.5e-49 198.4 221 43.0
AagrBONN_evm.TU.Sc2ySwM_117.1930 Anthoceros agrestis HOM05D006322 ORTHO05D007716 4.6e-47 192.2 208 45.2
SMO116G0484 Selaginella moellendorffii HOM05D006322 ORTHO05D007716 3.0e-46 189.5 213 42.7
Pp3c10_15580 Physcomitrium patens HOM05D006322 ORTHO05D007716 3.3e-45 186.0 208 46.2
PGSC0003DMG400040588 Solanum tuberosum HOM05D006322 ORTHO05D007716 3.0e-38 162.9 161 51.6
Actinidia15599 Actinidia chinensis HOM05D006322 ORTHO05D007716 6.7e-38 161.8 111 66.7
Glyma.07G240701 Glycine max HOM05D006322 ORTHO05D007716 1.6e-31 140.6 132 57.6
CBR_g45493 Chara braunii HOM05D006322 ORTHO05D007716 3.3e-29 132.9 217 32.7
Atru.chr4.3023 Acer truncatum HOM05D006322 ORTHO05D007716 3.1e-27 126.3 82 68.3
EL10Ac9g22265 Beta vulgaris HOM05D006322 ORTHO05D007716 5.2e-22 109.0 95 53.7
Cre09.g407600 Chlamydomonas reinhardtii HOM05D006322 ORTHO05D007716 1.7e-20 104.0 217 32.3
Lalb_Chr20g0120891 Lupinus albus HOM05D006322 ORTHO05D007716 3.3e-13 79.7 54 66.7
EL10Ac1g02106 Beta vulgaris HOM05D006322 ORTHO05D007716 5.7e-13 79.0 53 67.9
BcaB04g18920 Brassica carinata HOM05D006322 ORTHO05D007716 2.2e-12 77.0 79 49.4
CANSAT54G0480 Cannabis sativa HOM05D006322 ORTHO05D007716 6.3e-12 75.5 72 48.6
Atru.chr4.2979 Acer truncatum HOM05D006322 ORTHO05D007716 9.1e-11 71.6 43 67.4
CBR_g56708 Chara braunii HOM05D009436 ORTHO05D000048 4.5e-10 69.3 102 33.3


User provided reference genes

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