Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 6222.5 3151 100.0
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 4649.0 3176 74.8
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 4649.0 3173 74.9
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 4585.0 3178 73.8
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 4542.3 3173 72.9
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 4284.9 3061 72.4
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 4175.9 3160 68.2
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 4102.0 2990 70.6
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 3367.4 2273 75.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 3207.5 3206 53.2
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 3182.1 2314 71.1
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 3030.7 3195 51.5
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 3024.2 3206 51.1
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 3009.9 3217 52.1
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2995.3 3246 50.1
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2961.0 3218 50.0
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2935.2 3227 50.4
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2915.9 3253 49.2
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2891.7 3253 48.8
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2885.9 3250 48.7
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2867.4 3198 49.9
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2841.2 3208 49.3
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2832.7 3278 48.5
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2798.1 3184 49.5
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2787.7 3225 48.1
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2768.0 3191 48.3
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2726.4 3312 47.3
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2724.1 3209 48.1
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2723.0 3306 46.5
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2710.6 3873 42.6
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2649.8 3192 47.2
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2583.1 2844 50.7
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2572.0 2912 49.1
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2557.3 3259 44.7
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2530.4 3488 43.1
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2515.0 2975 47.4
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2487.6 3215 44.0
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2452.9 3245 43.4
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2431.4 3257 43.2
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2422.9 3213 42.9
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2419.8 3223 44.3
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2394.4 3224 43.8
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2359.7 3239 42.9
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2350.9 3242 42.2
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2345.9 3219 42.2
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2338.9 3207 42.0
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2321.2 3253 42.2
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 2318.9 3215 43.2
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2314.3 3206 42.2
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2314.3 3206 42.2
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2312.7 3213 41.9
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2312.0 3217 41.8
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2281.1 3253 42.0
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2270.0 3195 41.8
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2269.6 3250 41.4
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2266.5 3211 41.6
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2260.0 3260 40.6
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2259.2 3235 41.1
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2258.0 2210 55.6
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2256.9 3273 40.8
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 2246.9 3215 42.8
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2240.3 3200 41.8
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2218.7 3254 41.1
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2199.9 3239 40.9
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2170.6 3176 41.0
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 2169.4 1333 81.9
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2156.7 3157 41.3
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2156.7 3274 40.8
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2116.3 2898 42.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2088.5 3170 39.8
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 2028.8 2500 45.6
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1917.5 3312 37.4
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1902.1 2908 39.3
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1796.6 2823 38.1
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1703.7 1716 53.4
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1700.6 3288 35.1
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1637.5 1823 49.4
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1628.6 1286 64.9
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1595.9 1444 56.4
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1576.6 1664 50.7
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1566.6 2570 38.7
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1501.5 1231 63.4
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1496.1 1371 57.5
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1415.2 1724 46.3
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1409.0 1336 55.2
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1385.2 1339 54.0
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1369.8 1591 49.2
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1352.0 3166 31.4
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1250.7 1206 53.4
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1209.5 901 67.3
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1159.8 1862 38.3
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1146.0 941 63.7
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 0.0e+00 1145.6 2537 32.2
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 0.0e+00 1100.1 1837 36.7
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 8.1e-309 1065.4 2014 35.1
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 2.1e-301 1040.8 862 61.4
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 8.4e-282 975.7 1314 42.5
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 3.2e-281 973.8 1406 42.9
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 5.3e-260 903.3 1904 33.4
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.3e-258 898.7 1869 33.3
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 6.5e-250 869.8 1106 45.8
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 3.4e-238 830.9 1865 32.7
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.0e-231 809.3 594 67.2
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 1.9e-217 761.9 1731 32.5
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 3.5e-211 741.1 1571 33.5
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 3.6e-208 731.1 663 57.3
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 7.8e-195 686.8 662 55.1
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 6.4e-173 614.0 2135 26.5
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 8.2e-144 517.3 464 58.8
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 5.2e-138 498.0 1324 29.2
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.8e-136 491.5 1306 29.2
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.8e-135 489.6 1303 29.4
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 5.9e-134 484.6 857 38.3
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 3.8e-133 481.9 882 34.1
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 1.4e-130 473.4 883 34.9
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 3.8e-117 428.7 864 32.6
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 3.3e-116 425.6 1240 28.4
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 1.2e-113 417.2 461 46.2
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 7.0e-111 407.9 951 30.6
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.3e-96 360.5 335 58.2
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.6e-92 345.1 880 30.8
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 6.8e-90 338.2 273 64.1
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 4.6e-86 325.5 216 74.1
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 1.3e-80 307.4 235 63.8
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 8.4e-80 304.7 224 66.5
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 3.3e-76 292.7 426 40.6
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 2.9e-72 279.6 1195 25.1
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 3.8e-72 279.3 203 67.5
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 6.7e-61 241.9 212 59.4
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 7.4e-60 238.4 234 57.7
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 3.5e-54 219.5 370 40.3
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 3.3e-52 213.0 512 31.8
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.5e-49 204.1 157 65.0
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.6e-49 203.4 147 67.3
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 7.6e-49 201.8 154 68.2
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.0e-48 201.4 146 67.1
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 5.3e-42 179.1 154 56.5
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.0e-41 177.2 105 83.8
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-37 164.9 634 25.6
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.0e-36 160.6 171 54.4
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 1.0e-32 148.3 1016 19.7
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 3.2e-31 143.3 188 39.9
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 7.9e-30 138.7 130 53.1
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 1.8e-29 137.5 123 60.2
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 2.9e-24 120.2 685 22.6
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.2e-23 116.7 340 29.4
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 4.7e-22 112.8 80 66.2
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 5.2e-21 109.4 78 65.4
SEGI_01312 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 1.1e-20 108.2 817 24.0
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.0e-20 107.5 73 68.5
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-19 104.8 416 24.0
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.3e-19 104.8 61 82.0
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 6.5e-16 92.4 124 41.9
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 2.3e-13 84.0 102 43.1
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 3.0e-13 83.6 163 33.7
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 5.2e-13 82.8 222 23.9
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.5e-12 81.3 76 56.6
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 2.6e-12 80.5 42 97.6
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 2.8e-11 77.0 66 56.1
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 4.1e-10 73.2 119 40.3
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 5.9e-09 69.3 520 21.3
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 6.5e-08 65.9 193 27.5
Thhalv10006113m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 8.5e-08 65.5 318 22.6
VMungo0251G2589 Vigna mungo HOM05D004524 ORTHO05D005477 1.9e-07 64.3 51 64.7
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 2.1e-06 60.8 528 20.8
Phvul.002G328600 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.7e-06 60.5 436 19.5
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 3.6e-06 60.1 239 24.3


User provided reference genes

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