Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 2.3e-111 405.6 205 100.0
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 2.5e-94 349.0 205 85.9
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 1.7e-90 336.3 205 82.4
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 3.2e-89 332.0 204 81.4
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 3.5e-88 328.6 205 81.5
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 6.6e-87 324.3 205 82.4
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 8.7e-87 323.9 205 80.5
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 1.9e-86 322.8 190 86.3
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 7.3e-86 320.9 204 79.9
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 4.0e-84 315.1 206 78.2
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 7.6e-83 310.8 201 78.6
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 9.9e-83 310.5 202 77.7
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 1.3e-82 310.1 205 78.5
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.7e-82 309.7 205 76.6
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 3.8e-82 308.5 206 76.7
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 3.8e-82 308.5 205 76.1
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 3.8e-82 308.5 205 76.1
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 3.8e-82 308.5 205 75.6
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 8.4e-82 307.4 206 75.7
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 8.4e-82 307.4 190 81.6
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.2e-81 305.4 197 78.7
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 1.2e-80 303.5 204 77.0
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 2.1e-80 302.8 203 76.4
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 2.7e-80 302.4 205 76.6
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 3.5e-80 302.0 192 79.2
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 4.6e-80 301.6 204 74.5
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 4.6e-80 301.6 205 74.6
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 4.6e-80 301.6 189 82.0
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 6.0e-80 301.2 205 75.6
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 7.9e-80 300.8 205 76.1
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 7.9e-80 300.8 205 76.1
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 1.3e-79 300.1 198 76.8
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 1.3e-79 300.1 190 78.9
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.3e-79 299.3 192 78.1
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 2.3e-79 299.3 188 79.3
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 2.3e-79 299.3 205 76.1
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 2.3e-79 299.3 204 74.5
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 3.0e-79 298.9 205 73.7
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 3.0e-79 298.9 204 74.0
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 3.9e-79 298.5 199 76.4
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.9e-79 298.5 205 74.6
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.9e-79 298.5 205 74.6
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 6.7e-79 297.7 204 72.5
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 8.7e-79 297.4 197 74.6
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 8.7e-79 297.4 192 78.6
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 1.1e-78 297.0 186 78.5
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 1.5e-78 296.6 200 76.0
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 1.5e-78 296.6 189 77.2
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 1.9e-78 296.2 205 74.1
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 3.3e-78 295.4 202 74.8
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 4.3e-78 295.0 200 76.0
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 5.6e-78 294.7 200 75.5
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 7.4e-78 294.3 206 72.8
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 1.3e-77 293.5 186 78.0
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 1.6e-77 293.1 205 73.2
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 2.1e-77 292.7 205 71.7
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 6.2e-77 291.2 206 73.3
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 4.0e-76 288.5 199 74.9
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 4.0e-76 288.5 205 72.2
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 5.3e-76 288.1 206 70.9
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 6.9e-76 287.7 206 71.8
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 9.0e-76 287.3 188 75.5
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 1.2e-75 287.0 204 73.0
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 2.0e-75 286.2 199 73.4
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 2.6e-75 285.8 206 72.3
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 3.4e-75 285.4 205 72.2
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 4.5e-75 285.0 205 71.2
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 4.5e-75 285.0 205 71.2
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 4.5e-75 285.0 192 72.9
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.8e-75 284.6 226 68.1
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 9.9e-75 283.9 205 71.7
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 1.3e-74 283.5 205 71.7
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 2.2e-74 282.7 206 71.4
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 2.2e-74 282.7 204 71.1
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.9e-74 282.3 204 71.1
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.9e-74 282.3 204 71.1
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 3.8e-74 282.0 205 70.2
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 4.9e-74 281.6 205 70.2
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 6.4e-74 281.2 205 71.2
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 6.4e-74 281.2 205 71.2
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 6.4e-74 281.2 205 71.2
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 6.4e-74 281.2 205 71.2
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 8.4e-74 280.8 202 70.3
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 8.4e-74 280.8 197 72.6
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 2.4e-73 279.3 240 62.5
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 2.4e-73 279.3 192 73.4
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 4.2e-73 278.5 196 70.9
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 7.9e-72 274.2 230 64.3
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 1.3e-71 273.5 228 64.9
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 1.8e-71 273.1 199 70.9
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 3.3e-70 268.9 175 77.1
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 9.6e-70 267.3 204 67.2
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 2.1e-69 266.2 205 67.8
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 1.1e-68 263.8 187 72.2
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 1.1e-68 263.8 197 70.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.4e-67 258.8 205 66.8
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 5.5e-65 251.5 161 77.6
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 6.0e-64 248.1 313 47.0
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 3.3e-62 242.3 165 71.5
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 5.0e-58 228.4 186 65.6
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.2e-56 223.8 132 81.1
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 4.6e-56 221.9 155 72.3
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.3e-55 220.3 134 79.1
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 4.1e-52 208.8 134 80.6
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 5.0e-50 201.8 116 86.2
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 3.2e-49 199.1 118 85.6
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 2.7e-48 196.1 135 74.1
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 1.4e-44 183.7 121 74.4
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.4e-44 183.7 108 85.2
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 2.4e-44 183.0 152 61.8
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 3.1e-44 182.6 106 83.0
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 7.2e-41 171.4 147 61.2
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 1.5e-38 163.7 92 83.7
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 1.7e-34 150.2 185 45.4
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.2e-32 144.1 178 43.8
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 5.2e-31 138.7 134 55.2
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 2.2e-29 133.3 156 50.0
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 8.5e-26 121.3 184 41.3
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 3.6e-24 115.9 138 45.7
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 3.4e-22 109.4 183 41.0
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 1.3e-21 107.5 264 32.6
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 8.3e-13 78.2 149 34.2
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 5.4e-12 75.5 80 48.8
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.0e-10 71.2 49 77.6
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 2.3e-07 60.1 33 81.8
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 3.0e-07 59.7 52 57.7


User provided reference genes

Program Settings