Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 2915.2 1462 100.0
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2342.4 1474 80.5
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 2334.3 1473 80.5
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 2289.6 1476 78.7
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 2286.9 1467 79.1
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 2281.1 1478 78.0
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 2278.4 1473 79.2
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 2264.2 1478 77.6
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 2258.0 1473 78.6
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2169.8 1485 75.3
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2117.4 1498 73.6
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 2117.4 1501 73.9
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 2100.9 1481 72.7
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1785.4 1519 61.2
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1771.5 1522 60.8
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1741.9 1519 60.1
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1690.2 1520 59.2
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1687.5 1551 58.2
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1686.8 1520 58.8
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1681.8 1514 59.2
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1673.7 1554 57.6
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1657.9 1504 58.2
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1649.8 1473 59.9
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1648.3 1470 59.0
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1633.2 1520 57.1
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1632.1 1535 57.3
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1630.2 1523 58.0
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1629.8 1520 58.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1629.4 1520 58.0
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1620.5 1515 57.9
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1620.1 1527 57.6
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1617.1 1486 58.6
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1607.4 1606 54.3
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1587.4 1519 57.2
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1587.4 1552 55.5
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1578.9 1542 56.2
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1574.7 1520 57.2
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1568.9 1519 55.6
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1564.7 1600 53.4
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1527.7 1518 54.4
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1506.1 1517 54.2
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1496.9 1509 54.3
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1491.1 1511 53.8
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1490.7 1530 52.7
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1490.7 1523 54.0
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1489.9 1530 52.5
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1483.4 1509 54.3
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1482.6 1503 53.7
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1470.7 1415 56.5
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1466.8 1535 52.9
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1456.4 1500 53.3
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1453.7 1527 52.2
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1450.6 1507 53.1
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1450.6 1537 51.7
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1448.0 1503 53.5
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1440.6 1508 52.9
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1440.6 1508 52.9
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1439.1 1526 52.4
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1434.1 1509 52.6
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1430.2 1562 51.9
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1429.1 1527 52.4
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1427.2 1538 51.2
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1425.2 1561 51.4
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1425.2 1526 51.8
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1421.8 1532 51.8
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1419.4 1352 57.7
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1418.7 1535 51.7
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1414.8 1570 50.9
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1414.8 1561 51.2
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1413.3 1514 51.0
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1406.3 1518 51.7
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1404.4 1509 52.0
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1402.1 1527 50.8
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1397.9 1485 52.6
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1396.7 1533 52.1
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1390.6 1495 51.9
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1380.2 1495 51.5
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1369.0 1518 50.3
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1365.5 1497 51.2
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1364.0 1512 50.3
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1362.8 1511 49.8
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1362.4 1525 51.3
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1323.5 1530 50.6
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1313.9 1405 51.0
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1298.5 1293 54.5
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1297.0 1511 48.6
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1279.2 1352 53.0
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1276.2 1577 47.1
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1275.4 1353 52.1
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1223.0 1519 47.0
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1186.4 1445 47.8
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1184.9 1544 45.7
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1132.9 1135 54.6
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1122.5 1514 44.8
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 2.4e-303 1046.2 1082 52.9
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 8.5e-269 931.4 997 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 2.6e-241 840.1 1617 35.7
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.8e-203 713.8 897 44.8
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.4e-178 631.7 484 68.2
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 6.4e-176 622.9 484 67.4
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 6.4e-176 622.9 1475 31.5
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.3e-149 534.6 1032 36.5
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 6.7e-141 506.5 676 43.3
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 5.2e-109 400.6 393 55.7
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.3e-56 225.7 595 29.9
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 6.2e-54 217.6 179 57.5
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 5.7e-47 194.5 169 62.1
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 1.9e-39 169.5 107 72.0
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 1.0e-32 147.1 91 68.1
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.5e-23 116.7 81 72.8
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.0e-21 107.8 88 62.5
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 7.0e-21 107.8 88 62.5
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 1.5e-18 100.1 89 51.7
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.5e-18 99.4 67 80.6
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.4e-16 93.6 81 60.5
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.7e-16 91.3 80 58.8


User provided reference genes

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